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Carg11343 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11343
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription elongation factor 1 homolog
Genome locationCarg_Chr16:2325167..2327387
RNA-Seq ExpressionCarg11343
SyntenyCarg11343
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015956405.1 transcription elongation factor 1 homolog isoform X9 [Arachis duranensis]2.2e-4195.51Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKSSAKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTVTAL+EPIDIYSEWIDECERVNNP EDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

XP_020100434.1 transcription elongation factor 1 homolog [Ananas comosus]1.7e-4194.38Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKS AKPPPRKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA+C ICQESFSTTVTALTEPIDIYSEWIDECERVNN EEDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

XP_022922476.1 transcription elongation factor 1 homolog [Cucurbita moschata]5.6e-45100Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

XP_042951615.1 transcription elongation factor 1 homolog isoform X1 [Carya illinoinensis]1.7e-4194.38Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNN  E DGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

XP_042951617.1 transcription elongation factor 1 homolog isoform X2 [Carya illinoinensis]4.9e-4195.51Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNN  EDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

TrEMBL top hitse value%identityAlignment
A0A199USR0 Transcription elongation factor 1 homolog8.1e-4294.38Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKS AKPPPRKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA+C ICQESFSTTVTALTEPIDIYSEWIDECERVNN EEDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

A0A444ZWD9 Transcription elongation factor 1 homolog1.1e-4195.51Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKSSAKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTVTAL+EPIDIYSEWIDECERVNNP EDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

A0A6J1E485 Transcription elongation factor 1 homolog2.7e-45100Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

A0A6J1JCJ5 Transcription elongation factor 1 homolog2.7e-45100Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

A0A6P4CY99 Transcription elongation factor 1 homolog1.1e-4195.51Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKSSAKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTVTAL+EPIDIYSEWIDECERVNNP EDDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog4.9e-2051.22Show/hide
Query:  MGKRKSSAKPPPRKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVN
        MG+RKS  KPPP+K+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T +T L+EP+D+YS+WID CE  N
Subjt:  MGKRKSSAKPPPRKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVN

P36053 Transcription elongation factor 11.0e-2049.45Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNN---PEEDDG
        MGKRK S + P ++ + KLDT F+C FCNH  SV C +D KN IG  SC IC +SF T + +L++P+D+YS+W D  E VN+    + DDG
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNN---PEEDDG

P60002 Transcription elongation factor 1 homolog4.9e-2051.22Show/hide
Query:  MGKRKSSAKPPPRKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVN
        MG+RKS  KPPP+K+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T +T L+EP+D+YS+WID CE  N
Subjt:  MGKRKSSAKPPPRKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog1.3e-3681.4Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEED
        MGKRKS AKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+ESFSTT+TALTE IDIYSEWIDECERVN  E+D
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEED

Q8LHP0 Transcription elongation factor 1 homolog1.9e-4391.01Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
        MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV ALTEPIDIYSEWIDECERVNN E+DDGA
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein9.2e-3881.4Show/hide
Query:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEED
        MGKRKS AKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+ESFSTT+TALTE IDIYSEWIDECERVN  E+D
Subjt:  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCG
CATTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGA
TCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATTTTTCAATTCCGCCAGCGACTCGTCTGCGGAAGAGAACGTTAATTCCTCGCAATTCGATCAGCGATCTGACTCACGCCACAAGAAATGGGGAAACGAAAGTCAAGTGC
AAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATTGACATGAAGAACCTGATTG
GGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAAC
AACCCTGAAGAAGACGATGGTGCTTAGAGGGAATCATCGACAATGCTGCTTAGAGGGAATCATTGGGGAAGGTTGAAGTTTGCCATTTTTCTACGAGAATGAAGCTTGCT
CGTTCGAACGTTCCTTTCACGAATCTTAATTAATAGGGTGACTTACCGGTAGGTATAACAACACTCTTACCCTCGTAGCAGTATAGACAAGCATGTATGTATAATAGTAT
CATATTTTTCCTAGTTTGTGTGAATTTTCATCTATGTGCAAATGAAGAGTGGGTTTGTGAACCATCCTTTATTATTACTAATAATTCAACCTTCTTGTAGATGAAATATT
AACCGACGTTCGTTCCTTCCTGTTCGAGTATATGGCGTTTTATCATTGCTAGTTAATGTTATCGATATGGATTACCTTTTAAACGCTTTAAAATATTTTTATGTTCGTTT
GTTGAGTCTTTCAAGTATCTTTGATTTGATTTGATTTACTCTCCTGAAAAGCAGCTAATTCATTTATTCTCCTTGTCCGTCCCTGAATCTTTTCTTTACTCTCCTGTAAA
GGTTCCTGAG
Protein sequenceShow/hide protein sequence
MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA