CuGenDBv2

Gene ID	Carg11358
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4
Genome location	Carg_Chr16:2401023..2405735
RNA-Seq Expression	Carg11358
Synteny	Carg11358
Gene Ontology terms	GO:0007131 - reciprocal meiotic recombination (biological process)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600491.1 E3 ubiquitin-protein ligase CCNB1IP1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

7.1e-77

65.2

Show/hide

Query:  RFAFLIEHGRRLKIGTVFVS-----EDFEAQKMQARSLAMMEHAPFVINLMKPVDINPNDEWV-----NELEMQYKMNRIVAQCRQKCEVIQEKFTEKLE
        RFAFLIEHG RLKIGTVF +     E+FEAQ+MQARSLAMME APFVI     V  +     +      ELEMQYKMNRIVAQCRQKCEV+QEKFTEKLE
Subjt:  RFAFLIEHGRRLKIGTVFVS-----EDFEAQKMQARSLAMMEHAPFVINLMKPVDINPNDEWV-----NELEMQYKMNRIVAQCRQKCEVIQEKFTEKLE

Query:  QVHAAYQKMAKRCQMMEREMENLSKDKPELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW
        QVH AYQKMAKRCQMMEREMEN+SKDK ELQEKFAEKSR           + + H  L+      + NFY    PDLF NPV++MDNRE  RKGPRE+IW
Subjt:  QVHAAYQKMAKRCQMMEREMENLSKDKPELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW

Query:  ------------------PAKQAAPMAMEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
                          PAKQAAPMAMEAGNR   AH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  ------------------PAKQAAPMAMEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

KAG7031132.1 E3 ubiquitin-protein ligase CCNB1IP1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-67

65.4

Show/hide

Query:  NLMKPVDINPNDEWVN-----------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKPELQEKFAE
        +LMKPVDINPNDEWVN                 ELEMQYKMNRIVAQCRQKCEV+QEKFTEKLEQVH AYQKMAKRCQMMEREMEN+SKDK ELQEKFAE
Subjt:  NLMKPVDINPNDEWVN-----------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKPELQEKFAE

Query:  KSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMAMEAGNRGAG
        KSR           + + H  L+      + NFY    PDLF NPV++MDNRE  RKGPRE+IW                  PAKQAAPMAMEAGNR   
Subjt:  KSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMAMEAGNRGAG

Query:  AHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        AH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  AHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

XP_011653300.1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X3 [Cucumis sativus]

1.7e-67

63.41

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPNDEW N                          ELEMQYKMNR++AQCRQKCEV+QEKFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA
         ELQEKFAEKSR           + + H  L+      + NFY     DLF NPVN+MDNRE TRKGPRE+IW                  PAKQAAPMA
Subjt:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA

Query:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        MEAGNR AGAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

XP_011653301.1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4 [Cucumis sativus]

1.7e-67

63.41

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPNDEW N                          ELEMQYKMNR++AQCRQKCEV+QEKFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA
         ELQEKFAEKSR           + + H  L+      + NFY     DLF NPVN+MDNRE TRKGPRE+IW                  PAKQAAPMA
Subjt:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA

Query:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        MEAGNR AGAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

XP_016901144.1 PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X2 [Cucumis melo]

1.0e-67

63.41

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPNDEW N                          ELEMQYKMNR++AQCRQKCEV+QEKFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA
         ELQEKFAEKSR           + + H  L+      + NFY    PDLF NPVN+MDNRE  RKGPRE+IW                  PAKQAAPMA
Subjt:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA

Query:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        MEAGNR AGAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KXL4 RING-type domain-containing protein

8.5e-68

63.41

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPNDEW N                          ELEMQYKMNR++AQCRQKCEV+QEKFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA
         ELQEKFAEKSR           + + H  L+      + NFY     DLF NPVN+MDNRE TRKGPRE+IW                  PAKQAAPMA
Subjt:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA

Query:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        MEAGNR AGAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

A0A1S4DYU0 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X2

5.0e-68

63.41

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPNDEW N                          ELEMQYKMNR++AQCRQKCEV+QEKFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA
         ELQEKFAEKSR           + + H  L+      + NFY    PDLF NPVN+MDNRE  RKGPRE+IW                  PAKQAAPMA
Subjt:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA

Query:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        MEAGNR AGAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

A0A6J1FVB6 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4

2.5e-67

63.41

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPNDEWVN                          ELEMQYKMNRIVAQCRQKCEV+QEKFTEKLEQVH AYQKMAKRCQMMEREMEN+SKDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA
         ELQEKFAEKSR           + + H  L+      + NFY    PDLF NPV++MDNRE  RKGPRE+IW                  PAKQAAPMA
Subjt:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA

Query:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        MEAGNR  GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

A0A6J1J1N8 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4

2.5e-67

63.41

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPNDEWVN                          ELEMQYKMNRIVAQCRQKCEV+QEKFTEKLEQVH AYQKMAKRCQMMEREMEN+SKDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA
         ELQEKFAEKSR           + + H  L+      + NFY    PDLF NPV++MDNRE  RKGPRE+IW                  PAKQAAPMA
Subjt:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA

Query:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        MEAGNR  GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

A0A6J1J3Z1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X3

2.5e-67

63.41

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPNDEWVN                          ELEMQYKMNRIVAQCRQKCEV+QEKFTEKLEQVH AYQKMAKRCQMMEREMEN+SKDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA
         ELQEKFAEKSR           + + H  L+      + NFY    PDLF NPV++MDNRE  RKGPRE+IW                  PAKQAAPMA
Subjt:  PELQEKFAEKSR----------SVISFHLCLR------LVNFY----PDLFLNPVNMMDNRETTRKGPREDIW------------------PAKQAAPMA

Query:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        MEAGNR  GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  MEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

SwissProt top hits

e value

%identity

Alignment

F4HRI2 E3 ubiquitin-protein ligase CCNB1IP1 homolog

4.7e-47

49.22

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPN+EW+N                          +LEMQYKMNR+VAQCRQKCE +Q KF+EK+EQVH AYQKM KRCQMME+E+ENL+KDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKS---RSVISFHLCLR-------------LVNFY-----PDLFLNP-VNMMDNRETTRK----------GPREDIWPAKQ-----------
         ELQEKF+EKS   R +   +  LR               NFY     PD F NP VNMM+NRET RK          GP+++IWPA+Q           
Subjt:  PELQEKFAEKS---RSVISFHLCLR-------------LVNFY-----PDLFLNP-VNMMDNRETTRK----------GPREDIWPAKQ-----------

Query:  --AAPMAMEAGNRGAG-AHSA-SGSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT
          +  +  + GNR AG  H    G G  NP  TLRN ILSPIKR QLSR RPQ+FT
Subjt:  --AAPMAMEAGNRGAG-AHSA-SGSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT

I6PL68 E3 ubiquitin-protein ligase CCNB1IP1 homolog

1.5e-37

42.8

Show/hide

Query:  MKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKPE
        M+PVD NPND+W N                          ELEMQYKMNRIV QCRQKCE++Q KFTEKLE+VH AYQKMAK+CQ+ME+E+ENLS+DK E
Subjt:  MKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKPE

Query:  LQEKFAEKSRSVISF---------------HLCLRLVNFY-----PDLFLNPVNMMDNRETTRK---------GPREDIW--PAKQ----AAPMAMEAGN
        LQEKFAEKSR                       ++  N Y     PDLF    N+MD+ +  R+         G R++ W  P +Q    + P  + A  
Subjt:  LQEKFAEKSRSVISF---------------HLCLRLVNFY-----PDLFLNPVNMMDNRETTRK---------GPREDIW--PAKQ----AAPMAMEAGN

Query:  RGAGAHSAS---------------GSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT
         G+ AH+A+               G+   N S  LRN I+SP+KRPQLSR RP MFT
Subjt:  RGAGAHSAS---------------GSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT

Arabidopsis top hits

e value

%identity

Alignment

AT1G53490.1 RING/U-box superfamily protein

3.3e-48

49.22

Show/hide

Query:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK
        +LMKPVDINPN+EW+N                          +LEMQYKMNR+VAQCRQKCE +Q KF+EK+EQVH AYQKM KRCQMME+E+ENL+KDK
Subjt:  NLMKPVDINPNDEWVN--------------------------ELEMQYKMNRIVAQCRQKCEVIQEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK

Query:  PELQEKFAEKS---RSVISFHLCLR-------------LVNFY-----PDLFLNP-VNMMDNRETTRK----------GPREDIWPAKQ-----------
         ELQEKF+EKS   R +   +  LR               NFY     PD F NP VNMM+NRET RK          GP+++IWPA+Q           
Subjt:  PELQEKFAEKS---RSVISFHLCLR-------------LVNFY-----PDLFLNP-VNMMDNRETTRK----------GPREDIWPAKQ-----------

Query:  --AAPMAMEAGNRGAG-AHSA-SGSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT
          +  +  + GNR AG  H    G G  NP  TLRN ILSPIKR QLSR RPQ+FT
Subjt:  --AAPMAMEAGNRGAG-AHSA-SGSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCCCCGGTTCCCACTCCTCTGAAAATAGCAACACGGAAGAACATTTCCCGCCAAATTCGATCTTCTATTCATCGACCGGTTTCGAGATTCGCATTTCTAATTGAACA
CGGGAGAAGGCTGAAGATCGGGACTGTATTTGTTTCCGAGGATTTCGAGGCACAGAAGATGCAAGCAAGATCCTTAGCAATGATGGAGCATGCCCCATTCGTGATCAACC
TCATGAAACCTGTGGATATCAATCCAAACGATGAATGGGTCAATGAACTGGAGATGCAGTACAAGATGAACAGAATCGTGGCTCAATGCCGACAGAAATGTGAGGTTATA
CAAGAAAAGTTCACCGAGAAACTGGAGCAGGTGCATGCTGCATACCAAAAAATGGCCAAAAGATGCCAGATGATGGAGCGAGAAATGGAGAATTTATCCAAAGACAAACC
AGAGCTACAGGAGAAGTTTGCTGAAAAATCCAGGTCGGTCATCTCCTTTCATTTATGCCTCCGACTTGTTAATTTCTATCCTGATTTGTTCTTAAACCCTGTTAATATGA
TGGATAACAGAGAAACCACGAGGAAAGGGCCAAGAGAAGACATATGGCCGGCAAAACAAGCTGCTCCAATGGCAATGGAAGCTGGGAACAGAGGAGCTGGAGCTCACTCC
GCGTCTGGAAGTGGAGCTGGCAACCCCTCCATGACTCTACGCAACTTCATTTTGTCCCCAATCAAACGACCTCAGCTCTCTCGTCGCCCTCAAATGTTCACGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPPVPTPLKIATRKNISRQIRSSIHRPVSRFAFLIEHGRRLKIGTVFVSEDFEAQKMQARSLAMMEHAPFVINLMKPVDINPNDEWVNELEMQYKMNRIVAQCRQKCEVI
QEKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKPELQEKFAEKSRSVISFHLCLRLVNFYPDLFLNPVNMMDNRETTRKGPREDIWPAKQAAPMAMEAGNRGAGAHS
ASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

Carg11358 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome