; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg11392 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11392
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationCarg_Chr16:2656510..2658451
RNA-Seq ExpressionCarg11392
SyntenyCarg11392
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]2.1e-6292.75Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPYGINGSMNLRDGVDASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]1.1e-6393.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

XP_022931545.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata]3.3e-68100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

XP_023553544.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]9.5e-6899.28Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]3.2e-6393.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

TrEMBL top hitse value%identityAlignment
A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic9.9e-6392.75Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPYGINGSMNLRDGVDASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic9.9e-6392.75Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPYGINGSMNLRDGVDASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        +GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic5.3e-6493.48Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPYGINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

A0A6J1EZP8 Photosystem II 10 kDa polypeptide, chloroplastic1.6e-68100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

A0A6J1JDA0 Photosystem II 10 kDa polypeptide, chloroplastic1.6e-68100Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
        MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP

Query:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Subjt:  SGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic3.3e-5582.01Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK + +G+PSLAR S  FKV ASG KK+KTDKPYGINGSM LRDGVDASGRK KGKGVYQYVDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

P27202 Photosystem II 10 kDa polypeptide, chloroplastic1.4e-5381.43Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK AARG+PSL R    FK+ ASG KKIKTDKP+GINGSM+LRDGVDASGRKGKG GVY+YVDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSALAQ
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

P49108 Photosystem II 10 kDa polypeptide, chloroplastic1.3e-5178.72Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKS-GFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKD
        MAASVM +SV+LKPA FTVEK +ARG+PSL R S   F++ ASG KKIKTDKP+G+NGSM+LRDGVDASGRKGKG GVY++VDKYGANVDGYSPIY+  +
Subjt:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKS-GFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKD

Query:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSALAQ
Subjt:  WSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

Q40163 Photosystem II 10 kDa polypeptide, chloroplastic1.3e-5481.29Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS
        MA++VM+S+SLKP  FT+EK + +G+PSL R S  FKV ASG KK+KTDKPYGINGSM LRDGVDASGRK KGKGVYQYVDKYGANVDGYSPIY+T +WS
Subjt:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

Q40519 Photosystem II 10 kDa polypeptide, chloroplastic6.6e-5682.01Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS
        MA++VM   SLKPAPF+VEK A +G+PSLAR S  F+V+ASG KK+KTDKPYGINGSM+LRDGVDASGRK KGKGVYQ+VDKYGANVDGYSPIY+T DWS
Subjt:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWS

Query:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        PSGDVYVGGTTGLAIWAVTL G+LAGGALLV+NTSALAQ
Subjt:  PSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R9.8e-5581.43Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW
        MAASVM +SV+LKPA FTVEK AARG+PSL R    FK+ ASG KKIKTDKP+GINGSM+LRDGVDASGRKGKG GVY+YVDKYGANVDGYSPIY+  +W
Subjt:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW

Query:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        S SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSALAQ
Subjt:  SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGT
CGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTATGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGG
GAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTACCACT
GGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATTGCAAATTTTCGAGCCAAAGCAGAAGAAGAAGAAGAAGAAGAACAAGAAGAAGCTTATCGATTGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGC
TCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCT
ATGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGAT
GGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTACCACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGC
TGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAAGCTGGAGGGAAGTTCAGAAGTCTGTTCTTTTCACTTTAGTTTTTGTAGCATATTATTATGAACA
ACATTATCAAGAAATTCGATGTAATTATCTGGACAACTGCGTCGTAAATGCTTGGTAAGATAAATTCTTCTCTTTCCTGT
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTT
GLAIWAVTLAGLLAGGALLVYNTSALAQ