; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg11413 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11413
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrotrans_gag domain-containing protein
Genome locationCarg_Chr16:2823989..2824654
RNA-Seq ExpressionCarg11413
SyntenyCarg11413
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577099.1 hypothetical protein SDJN03_24673, partial [Cucurbita argyrosperma subsp. sororia]5.7e-12397.29Show/hide
Query:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
        MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
Subjt:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA

Query:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
        LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
Subjt:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV

Query:  SYSDLRNSALLVEQCLNRKDV
        SYSDLRNSALLVEQCLNRKDV
Subjt:  SYSDLRNSALLVEQCLNRKDV

KAG7015101.1 hypothetical protein SDJN02_22734, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-127100Show/hide
Query:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
        MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
Subjt:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA

Query:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
        LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
Subjt:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV

Query:  SYSDLRNSALLVEQCLNRKDV
        SYSDLRNSALLVEQCLNRKDV
Subjt:  SYSDLRNSALLVEQCLNRKDV

XP_022931358.1 uncharacterized protein LOC111437567 isoform X1 [Cucurbita moschata]3.7e-12296.83Show/hide
Query:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
        MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDT PLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
Subjt:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA

Query:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
        LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
Subjt:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV

Query:  SYSDLRNSALLVEQCLNRKDV
        SYSDLRNSALLVEQCLNRKDV
Subjt:  SYSDLRNSALLVEQCLNRKDV

XP_022931360.1 uncharacterized protein LOC111437567 isoform X2 [Cucurbita moschata]2.2e-11496.63Show/hide
Query:  MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNA
        MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDT PLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNA
Subjt:  MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNA

Query:  DGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSALLVE
        DGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSALLVE
Subjt:  DGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSALLVE

Query:  QCLNRKDV
        QCLNRKDV
Subjt:  QCLNRKDV

XP_023522569.1 uncharacterized protein LOC111786568 [Cucurbita pepo subsp. pepo]1.4e-12196.38Show/hide
Query:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
        MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDT PLVAKRWVLGLENIFDCIGCSDEQ VSFACLRLKDSA
Subjt:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA

Query:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
        LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
Subjt:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV

Query:  SYSDLRNSALLVEQCLNRKDV
        SYSDLRNSALLVEQCLNRKDV
Subjt:  SYSDLRNSALLVEQCLNRKDV

TrEMBL top hitse value%identityAlignment
A0A0A0L042 Retrotrans_gag domain-containing protein1.1e-6860.09Show/hide
Query:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
        +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT+EE  +K + FF C+PP FGEDT PLVA+RW+L LENIFD I CSDE KVSFACLRLKD+A
Subjt:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA

Query:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
         SWW+V    L ADG  VTW+KFK+LF KRY PSWLK EK REL  L Q      EYDE+FI L+SL  E  PD++ EARLF +GLR DI  Q+C  +N 
Subjt:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV

Query:  SYSDLRNSALLVEQCLNR
        S +++RN AL+VEQ +N+
Subjt:  SYSDLRNSALLVEQCLNR

A0A5A7TP79 Retrotrans_gag domain-containing protein8.7e-6960.09Show/hide
Query:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
        +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT+EE ++K + FF C+PP FGEDT PLVA+RW+L LENIFD I CSD+QKVSFA LRLKD+A
Subjt:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA

Query:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
         SWW+V    L ADG  VTWEK K+LF KRY P WLK EK REL  L Q      EYDE+FI L+SL  E  PD++ EARLF +GLR DI  Q+CF++NV
Subjt:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV

Query:  SYSDLRNSALLVEQCLNR
        SY+++RN AL+ EQ +N+
Subjt:  SYSDLRNSALLVEQCLNR

A0A5D3CX20 Retrotrans_gag domain-containing protein1.8e-6960.55Show/hide
Query:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
        +KTN  L+AAEP++NLG+V DEIC+L+ E +R++AA+QT+EE ++K + FF C+PP FGEDT PLVA+RW+L LENIFD I CSD+QKVSFA LRLKD+A
Subjt:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA

Query:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
         SWW+V    L ADG  VTWEKFK+LF KRY P WLK EK REL  L Q      EYDE+FI L+SL  E  PD++ EARLF +GLR DI  Q+CF++NV
Subjt:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV

Query:  SYSDLRNSALLVEQCLNR
        SY+++RN AL+ EQ +N+
Subjt:  SYSDLRNSALLVEQCLNR

A0A6J1EYB6 uncharacterized protein LOC111437567 isoform X11.8e-12296.83Show/hide
Query:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
        MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDT PLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA
Subjt:  MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSA

Query:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
        LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV
Subjt:  LSWWIVSKRYLNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNV

Query:  SYSDLRNSALLVEQCLNRKDV
        SYSDLRNSALLVEQCLNRKDV
Subjt:  SYSDLRNSALLVEQCLNRKDV

A0A6J1EZ79 uncharacterized protein LOC111437567 isoform X21.0e-11496.63Show/hide
Query:  MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNA
        MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDT PLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNA
Subjt:  MNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRYLNA

Query:  DGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSALLVE
        DGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQ  +   EYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSALLVE
Subjt:  DGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSALLVE

Query:  QCLNRKDV
        QCLNRKDV
Subjt:  QCLNRKDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGCTTAATCAGGGAAGGGCTTAGGGTAGTTGCTGCTAG
ACAAACTAATGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGTCAACCTCCTTGGTTTGGAGAGGATACCGGCCCCTTAGTTGCTAAACGCTGGGTTTTGGGGT
TAGAGAACATCTTTGATTGCATAGGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATAC
TTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTGGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAGTT
GGGACAAAGGAAACAGAACCGTGATGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATG
AAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTCCGATCTTAGAAACTCGGCGTTACTGGTGGAACAGTGCCTTAACCGTAAAGAT
GTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACTAACAGACCCCTAATTGCAGCTGAGCCAGCTATGAATTTGGGAGATGTTTGTGACGAAATTTGCAGCTTAATCAGGGAAGGGCTTAGGGTAGTTGCTGCTAG
ACAAACTAATGAAGAACATAATAGCAAGTTCAATCAGTTTTTTGTCTGTCAACCTCCTTGGTTTGGAGAGGATACCGGCCCCTTAGTTGCTAAACGCTGGGTTTTGGGGT
TAGAGAACATCTTTGATTGCATAGGCTGTTCAGACGAGCAAAAGGTTTCCTTTGCTTGTTTAAGACTGAAAGATTCAGCACTTTCTTGGTGGATAGTGTCAAAAAGATAC
TTGAATGCTGATGGGGCTGCAGTGACATGGGAGAAGTTTAAGGACTTATTCTATAAGAGATATTTCCCTAGTTGGTTGAAGCATGAGAAGCATCGTGAACTCTGGAAGTT
GGGACAAAGGAAACAGAACCGTGATGAGTATGATGAAGAATTCATTACCTTGTCTTCTCTTGTTTCTGAACTAAATCCAGACGATTCTTTGGAAGCTAGGCTGTTCTATG
AAGGCTTAAGGCCAGATATTAGTCGACAACTTTGCTTCACGGATAACGTGTCGTACTCCGATCTTAGAAACTCGGCGTTACTGGTGGAACAGTGCCTTAACCGTAAAGAT
GTTTGA
Protein sequenceShow/hide protein sequence
MKTNRPLIAAEPAMNLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGLENIFDCIGCSDEQKVSFACLRLKDSALSWWIVSKRY
LNADGAAVTWEKFKDLFYKRYFPSWLKHEKHRELWKLGQRKQNRDEYDEEFITLSSLVSELNPDDSLEARLFYEGLRPDISRQLCFTDNVSYSDLRNSALLVEQCLNRKD
V