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Carg11419 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11419
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSWIB domain-containing protein
Genome locationCarg_Chr16:2861957..2864416
RNA-Seq ExpressionCarg11419
SyntenyCarg11419
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577105.1 hypothetical protein SDJN03_24679, partial [Cucurbita argyrosperma subsp. sororia]7.9e-3685.88Show/hide
Query:  PAKISVGARLL-SQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPF
        P  I++   L+ ++KIQLKPQLCKFLGIPL+APRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPF
Subjt:  PAKISVGARLL-SQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPF
KAG7015106.1 hypothetical protein SDJN02_22739 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-44100Show/hide
Query:  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFW
        MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFW
Subjt:  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFW
PQQ05948.1 uncharacterized protein Pyn_14846 [Prunus yedoensis var. nudiflora]1.6e-0751.52Show/hide
Query:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
        A++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK  LHG
Subjt:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
XP_016647358.1 PREDICTED: uncharacterized protein LOC103321138 isoform X2 [Prunus mume]1.2e-0748Show/hide
Query:  MAPAKISVGARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
        MA A     +++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK  LHG
Subjt:  MAPAKISVGARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
XP_022136393.1 uncharacterized protein LOC111008113 [Momordica charantia]2.2e-2275Show/hide
Query:  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
        MAPAKI+V A +LS+K+Q KPQLCKFLGIPL++PRGDIPILI+KFLK YQ QSPG+ KD  WEENLKA L G
Subjt:  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
TrEMBL top hitse value%identityAlignment
A0A314UH77 SWIB domain-containing protein7.5e-0851.52Show/hide
Query:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
        A++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK  LHG
Subjt:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
A0A314YMV5 SWIB domain-containing protein7.5e-0851.52Show/hide
Query:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
        A++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK  LHG
Subjt:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
A0A6J1C7G5 uncharacterized protein LOC1110081131.1e-2275Show/hide
Query:  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
        MAPAKI+V A +LS+K+Q KPQLCKFLGIPL++PRGDIPILI+KFLK YQ QSPG+ KD  WEENLKA L G
Subjt:  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
A0A6J5W378 SWIB domain-containing protein1.7e-0750Show/hide
Query:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
        +++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK  LHG
Subjt:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
A0A6P5S3I0 uncharacterized protein LOC1107535861.7e-0750Show/hide
Query:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
        +++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK  LHG
Subjt:  ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCATTGCTCCTCGCGGCGA
TATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACATCAGAGCCCTGGGATTGGAAAGGACTGGACCTGGGAAGAAAACTTAAAAGCCACATTACACGGCATGA
CAGCAGACGATGGCAAAGTGGATAGGCTCTGGCCATTTTGGTAA
mRNA sequenceShow/hide mRNA sequence
AAAGTGGGGAATTGCAGAGGAAGCCATGGCAGCCACCGGCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCACGATCA
CGATCACGATCACGATCACGATCACGATCACGATCAAAGCTGGTGACTGGTAAAGAAATCTCGAAAATCCATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAA
GCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCATTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAA
CATCAGAGCCCTGGGATTGGAAAGGACTGGACCTGGGAAGAAAACTTAAAAGCCACATTACACGGCATGACAGCAGACGATGGCAAAGTGGATAGGCTCTGGCCATTTTG
GTAA
Protein sequenceShow/hide protein sequence
MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFW