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Carg11448 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11448
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUDP-glucose 4-epimerase
Genome locationCarg_Chr16:3057535..3059304
RNA-Seq ExpressionCarg11448
SyntenyCarg11448
Gene Ontology termsGO:0006012 - galactose metabolic process (biological process)
GO:0006364 - rRNA processing (biological process)
GO:0005829 - cytosol (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003978 - UDP-glucose 4-epimerase activity (molecular function)
InterPro domainsIPR016040 - NAD(P)-binding domain
IPR036291 - NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577138.1 hypothetical protein SDJN03_24712, partial [Cucurbita argyrosperma subsp. sororia]1.1e-43100Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK

KAG7015135.1 hypothetical protein SDJN02_22768, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-45100Show/hide
Query:  MTGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
        MTGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
Subjt:  MTGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK

XP_022931480.1 UDP-glucose 4-epimerase GEPI48-like [Cucurbita moschata]1.1e-43100Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK

XP_022985412.1 UDP-glucose 4-epimerase GEPI48-like [Cucurbita maxima]1.1e-43100Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK

XP_023553205.1 UDP-glucose 4-epimerase GEPI48-like [Cucurbita pepo subsp. pepo]1.1e-43100Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK

TrEMBL top hitse value%identityAlignment
A0A0A0KYE5 UDP-glucose 4-epimerase3.5e-4091.95Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS
        GCEVYNLGTGKGTSVLEMV+AFEKASGKKIPLV SARRPGDAEIVYAST+KAEKELNWKAKYGI++MC+DQWNWASKNPYGYEPP S
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS

A0A1S3BS45 UDP-glucose 4-epimerase1.3e-4297.7Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGI+EMCRDQWNWASKNPYGYEPP S
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS

A0A5A7TSN5 UDP-glucose 4-epimerase1.3e-4297.7Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGI+EMCRDQWNWASKNPYGYEPP S
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS

A0A6J1ETR8 UDP-glucose 4-epimerase5.2e-44100Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK

A0A6J1J4U1 UDP-glucose 4-epimerase5.2e-44100Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK

SwissProt top hitse value%identityAlignment
O65781 UDP-glucose 4-epimerase GEPI481.7e-3990.24Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGY
        GCEVYNLGTGKGTSVLEMV AFE+ASGKKIPLVM+ RRPGDAE+VYAST+KAE+ELNWKAKYGI+EMCRDQWNWASKNPYGY
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGY

Q8LNZ3 UDP-glucose 4-epimerase 13.7e-3987.36Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS
        GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLV + RRPGDAEIVYA T KAEKEL WKAKYG+EEMCRD WNWASKNPYGY  P S
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS

Q9C7W7 UDP-glucose 4-epimerase 41.9e-3584.15Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGY
        GCEVYNLGTGKGT+VLEMV AFEKASG KIPLV   RRPGDAE VYAST KAE+ELNWKA +GIEEMCRDQWNWAS NP+GY
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGY

Q9SN58 UDP-glucose 4-epimerase 52.0e-3783.72Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPS
        GCEVYNLGTG GTSVLEMV AFEKASGKKIPLV++ RRPGDAE+VYAST +AE ELNWKAKYGIEEMCRD WNWAS NPYGY+  S
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPS

Q9T0A7 UDP-glucose 4-epimerase 22.0e-3784.88Show/hide
Query:  CEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS
        CEVYNLGTG GTSVLEMVAAFEKASGKKIPLVM+ RRPGDAE+VYAST KAE+ELNWKAK GIEEMCRD WNWAS NPYGY   S+
Subjt:  CEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS

Arabidopsis top hitse value%identityAlignment
AT1G12780.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 18.1e-3475.9Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYE
        GC  YNLGTG+GTSVLEMVAAFEKASGKKIP+ +  RR GDA  VYAST KAEKEL WKAKYG++EMCRDQW WA+ NP+GY+
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYE

AT1G63180.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 36.2e-3474.7Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYE
        GC  YNLGTG+GTSVLEMV++FEKASGKKIP+ +  RR GDA  VYAST KAEKEL WKAKYG++EMCRDQWNWA+KNP+G++
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYE

AT1G64440.1 NAD(P)-binding Rossmann-fold superfamily protein1.3e-3684.15Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGY
        GCEVYNLGTGKGT+VLEMV AFEKASG KIPLV   RRPGDAE VYAST KAE+ELNWKA +GIEEMCRDQWNWAS NP+GY
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGY

AT4G10960.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 51.4e-3883.72Show/hide
Query:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPS
        GCEVYNLGTG GTSVLEMV AFEKASGKKIPLV++ RRPGDAE+VYAST +AE ELNWKAKYGIEEMCRD WNWAS NPYGY+  S
Subjt:  GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPS

AT4G23920.1 UDP-D-glucose/UDP-D-galactose 4-epimerase 21.4e-3884.88Show/hide
Query:  CEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS
        CEVYNLGTG GTSVLEMVAAFEKASGKKIPLVM+ RRPGDAE+VYAST KAE+ELNWKAK GIEEMCRD WNWAS NPYGY   S+
Subjt:  CEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGTTGTGAAGTCTACAATTTAGGAACTGGAAAGGGTACATCAGTTTTGGAGATGGTTGCAGCTTTTGAAAAGGCATCTGGAAAGAAAATTCCTCTTGTAATGTC
TGCACGCCGACCCGGTGACGCTGAAATCGTCTACGCGTCTACACACAAAGCAGAAAAGGAGCTGAACTGGAAAGCAAAATATGGAATAGAGGAGATGTGCAGGGATCAGT
GGAACTGGGCCAGCAAGAATCCTTATGGCTATGAACCTCCCAGCTCCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGGTTGTGAAGTCTACAATTTAGGAACTGGAAAGGGTACATCAGTTTTGGAGATGGTTGCAGCTTTTGAAAAGGCATCTGGAAAGAAAATTCCTCTTGTAATGTC
TGCACGCCGACCCGGTGACGCTGAAATCGTCTACGCGTCTACACACAAAGCAGAAAAGGAGCTGAACTGGAAAGCAAAATATGGAATAGAGGAGATGTGCAGGGATCAGT
GGAACTGGGCCAGCAAGAATCCTTATGGCTATGAACCTCCCAGCTCCAAGTGATGGGTATTACTTATATCTCTCTCTTGGGGCCATCTCTTAACCCCACACGCTTAGACT
TCTTGGTTACCTTCCAAGTTGATCATAACTGAGATATCTCGATGTAATGAACCCTATTTAATAAAAACAGCTCTTGTAAGTTCCAAGTCCTCCATTGATTTGGTTCAGTT
TTTGATCAATTTCGCTCGATTTTGTGAAAACAAGGAGAGAGTTAGATCTTGATGGATTCTGATATAACCCGTTTCGTTTGGATATTGATCGGTCTTAGTGTGATAAGATT
TTCACATAACGAGCTATGAAAGCGTTCTTACTAAACCTTTTCTTATGCGGGCTTTTTCGAGTCAGGTCGGGCCACTATTAGAACTAAATGATGGCATCCCAAAAAGGCCA
TGAACTGCTGTTGATGGTGGATTAGTTCAAATTTGAATTTGAATGGATAAATTGGTAATGCCTTAATTTCTAAA
Protein sequenceShow/hide protein sequence
MTGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKAKYGIEEMCRDQWNWASKNPYGYEPPSSK