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Carg11475 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11475
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S11, chloroplastic
Genome locationCarg_Chr17:9189171..9193794
RNA-Seq ExpressionCarg11475
SyntenyCarg11475
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014534.1 30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-124100Show/hide
Query:  MKKEKLRVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQTQIIKQKKGSKVIARNLKV
        MKKEKLRVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQTQIIKQKKGSKVIARNLKV
Subjt:  MKKEKLRVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQTQIIKQKKGSKVIARNLKV

Query:  CNTRAIINDQKSSGRKRRLMNIRLQLLTAVILSKDLTIGIRDCTISIQLASLAFSGRTSPAALTLASTSGRTASPMTSLEDFTHPPTTNFRSTNPRPPSP
        CNTRAIINDQKSSGRKRRLMNIRLQLLTAVILSKDLTIGIRDCTISIQLASLAFSGRTSPAALTLASTSGRTASPMTSLEDFTHPPTTNFRSTNPRPPSP
Subjt:  CNTRAIINDQKSSGRKRRLMNIRLQLLTAVILSKDLTIGIRDCTISIQLASLAFSGRTSPAALTLASTSGRTASPMTSLEDFTHPPTTNFRSTNPRPPSP

Query:  LSNTVLRRTRLEYLEKVTGVKTVGCWAAIEECREMGD
        LSNTVLRRTRLEYLEKVTGVKTVGCWAAIEECREMGD
Subjt:  LSNTVLRRTRLEYLEKVTGVKTVGCWAAIEECREMGD

PHT28657.1 50S ribosomal protein L14, chloroplastic [Capsicum baccatum]3.8e-0851.61Show/hide
Query:  GSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAI
        G+S+FL+L+WY WI+ ++          A NAIR + +Q MQ+ EVMIKGPSL RD  LRAI
Subjt:  GSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAI

PLY89337.1 hypothetical protein LSAT_5X50421 [Lactuca sativa]2.3e-0544Show/hide
Query:  RVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        +V +  LC    G+S FL+L  Y   + ++           GNAIRA+ +Q MQ+ EVMIKGP LGRD  LRAI+
Subjt:  RVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

XP_030483739.1 uncharacterized protein LOC115700311 [Cannabis sativa]1.1e-0770.83Show/hide
Query:  RSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        R K RDTICRSNR+ NAI    +Q MQQ EVMIKGP LGRDA LRAI+
Subjt:  RSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

YP_009752023.1 ribosomal protein S11 [Cionosicys macranthus]1.5e-0480Show/hide
Query:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        AGNAIRA+ANQ MQ+ EVMIKGP LGRDA LRAI+
Subjt:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

TrEMBL top hitse value%identityAlignment
A0A1L2JIY6 30S ribosomal protein S11, chloroplastic1.6e-0447.89Show/hide
Query:  VLCETDDGSSNFLILQWYLWIQRSKNRDT-ICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        V+C +  G+  F          R   R T       AGNAIRA+A+Q MQ+ EVMIKGP LGRDA LRAI+
Subjt:  VLCETDDGSSNFLILQWYLWIQRSKNRDT-ICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

A0A2G2V6S4 50S ribosomal protein L14, chloroplastic1.9e-0851.61Show/hide
Query:  GSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAI
        G+S+FL+L+WY WI+ ++          A NAIR + +Q MQ+ EVMIKGPSL RD  LRAI
Subjt:  GSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAI

A0A2J6LPT2 S1-like domain-containing protein1.1e-0544Show/hide
Query:  RVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        +V +  LC    G+S FL+L  Y   + ++           GNAIRA+ +Q MQ+ EVMIKGP LGRD  LRAI+
Subjt:  RVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

A0A4V4H289 Uncharacterized protein1.2e-0450.85Show/hide
Query:  FLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        FL L WY   + ++          A NAIR + NQ MQ+ EVMIKGP LGRDA LRAI+
Subjt:  FLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

A0A6H0EUA3 30S ribosomal protein S11, chloroplastic7.3e-0580Show/hide
Query:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        AGNAIRA+ANQ MQ+ EVMIKGP LGRDA LRAI+
Subjt:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic2.2e-0674.29Show/hide
Query:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        AGNAIRA+ +Q MQ+ EVMIKGP LGRDA LRAI+
Subjt:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

B1A968 30S ribosomal protein S11, chloroplastic2.2e-0674.29Show/hide
Query:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        AGNAIRA+ +Q MQ+ EVMIKGP LGRDA LRAI+
Subjt:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

Q09ME4 30S ribosomal protein S11, chloroplastic7.5e-0777.14Show/hide
Query:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        AGNAIRA+A+Q MQ+ EVMIKGP LGRDA LRAI+
Subjt:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

Q2L937 30S ribosomal protein S11, chloroplastic2.2e-0674.29Show/hide
Query:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        AGNAIRA+ +Q MQ+ EVMIKGP LGRDA LRAI+
Subjt:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

Q9BBQ3 30S ribosomal protein S11, chloroplastic2.2e-0674.29Show/hide
Query:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        AGNAIR +A+Q MQ+ EVMIKGP LGRDA LRAI+
Subjt:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ

Arabidopsis top hitse value%identityAlignment
ATCG00750.1 ribosomal protein S117.7e-0771.43Show/hide
Query:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ
        AGNAIRA+ +Q MQ+ EV IKGP LGRDA LRAI+
Subjt:  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGGTCAAGTAATTTCTTGATCCTCCAATGGTACTTGTGGATTCAAAGGTCCAAGAA
TAGGGACACCATTTGCCGCTCAAACCGCGCAGGAAATGCTATTCGGGCTCTAGCAAATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTAGTCTCGGAAGAG
ATGCAGTGTTAAGAGCTATTCAGACACAGATAATAAAACAAAAAAAAGGGTCAAAAGTGATAGCGAGGAACCTGAAGGTCTGCAACACAAGAGCCATCATTAACGACCAG
AAAAGCAGTGGAAGGAAGCGGCGGCTGATGAACATTCGTCTCCAACTTCTCACCGCCGTCATCCTAAGCAAAGACCTAACAATCGGAATCCGCGACTGTACAATCTCAAT
ACAGCTCGCATCCTTAGCCTTCAGCGGCAGGACATCACCCGCCGCCTTAACACTGGCATCGACCAGCGGCCGAACAGCATCTCCAATGACTTCCTTGGAGGACTTCACCC
ATCCTCCGACCACCAATTTCCGATCCACAAACCCCAGACCGCCATCGCCACTCTCGAACACAGTTTTGAGAAGAACCCGCTTGGAGTACTTGGAGAAGGTCACCGGGGTG
AAGACTGTAGGTTGTTGGGCAGCCATTGAAGAGTGTAGAGAAATGGGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGGTCAAGTAATTTCTTGATCCTCCAATGGTACTTGTGGATTCAAAGGTCCAAGAA
TAGGGACACCATTTGCCGCTCAAACCGCGCAGGAAATGCTATTCGGGCTCTAGCAAATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTAGTCTCGGAAGAG
ATGCAGTGTTAAGAGCTATTCAGACACAGATAATAAAACAAAAAAAAGGGTCAAAAGTGATAGCGAGGAACCTGAAGGTCTGCAACACAAGAGCCATCATTAACGACCAG
AAAAGCAGTGGAAGGAAGCGGCGGCTGATGAACATTCGTCTCCAACTTCTCACCGCCGTCATCCTAAGCAAAGACCTAACAATCGGAATCCGCGACTGTACAATCTCAAT
ACAGCTCGCATCCTTAGCCTTCAGCGGCAGGACATCACCCGCCGCCTTAACACTGGCATCGACCAGCGGCCGAACAGCATCTCCAATGACTTCCTTGGAGGACTTCACCC
ATCCTCCGACCACCAATTTCCGATCCACAAACCCCAGACCGCCATCGCCACTCTCGAACACAGTTTTGAGAAGAACCCGCTTGGAGTACTTGGAGAAGGTCACCGGGGTG
AAGACTGTAGGTTGTTGGGCAGCCATTGAAGAGTGTAGAGAAATGGGGGATTGA
Protein sequenceShow/hide protein sequence
MKKEKLRVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQTQIIKQKKGSKVIARNLKVCNTRAIINDQ
KSSGRKRRLMNIRLQLLTAVILSKDLTIGIRDCTISIQLASLAFSGRTSPAALTLASTSGRTASPMTSLEDFTHPPTTNFRSTNPRPPSPLSNTVLRRTRLEYLEKVTGV
KTVGCWAAIEECREMGD