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Carg11488 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11488
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionEmbryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2
Genome locationCarg_Chr17:9268478..9269862
RNA-Seq ExpressionCarg11488
SyntenyCarg11488
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0018142 - protein-DNA covalent cross-linking (biological process)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576026.1 hypothetical protein SDJN03_26665, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5182.27Show/hide
Query:  MCGRASCTLGADDIPRAYHRTLNMDRFIEMAVTVFVTCGLGGFLEFVIIVF-ADKLKNDRKMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCL
        MCGRASCTLGADDIPRAYHRTLNMDRF  +          G  L  V   + +DKLKNDRK+NTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCL
Subjt:  MCGRASCTLGADDIPRAYHRTLNMDRFIEMAVTVFVTCGLGGFLEFVIIVF-ADKLKNDRKMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCL

Query:  AKRSSVTVSQIKWDREDISSESKSGMDDCSKIGISPKIRKK
        AK SSVTVSQIKWDREDISSESKSGMDDCSKIGISPKIRKK
Subjt:  AKRSSVTVSQIKWDREDISSESKSGMDDCSKIGISPKIRKK
KAG7014547.1 hypothetical protein SDJN02_24725, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-83100Show/hide
Query:  MCGRASCTLGADDIPRAYHRTLNMDRFIEMAVTVFVTCGLGGFLEFVIIVFADKLKNDRKMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLA
        MCGRASCTLGADDIPRAYHRTLNMDRFIEMAVTVFVTCGLGGFLEFVIIVFADKLKNDRKMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLA
Subjt:  MCGRASCTLGADDIPRAYHRTLNMDRFIEMAVTVFVTCGLGGFLEFVIIVFADKLKNDRKMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLA

Query:  KRSSVTVSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
        KRSSVTVSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
Subjt:  KRSSVTVSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
XP_011659220.1 uncharacterized protein LOC101206083 isoform X1 [Cucumis sativus]5.2e-2574.74Show/hide
Query:  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
        NTSVKPE S S EEH+R+VN  ASSE+SKDCLAK SS T    QIK DREDISS+ KSGMDD SK+G SPKIRKKG+LKTGNDNQ TLF YFG+K
Subjt:  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
XP_038896829.1 abasic site processing protein YoqW isoform X1 [Benincasa hispida]3.0e-2575.79Show/hide
Query:  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
        NT VKPE S S EEH+ DVNLRASSE+SKDCLAK SS T    QIK DREDISS SKSG+DD SK+G SPK RKKG+LK GNDNQSTLF YFGRK
Subjt:  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
XP_038896830.1 abasic site processing protein HMCES isoform X2 [Benincasa hispida]3.0e-2575.79Show/hide
Query:  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
        NT VKPE S S EEH+ DVNLRASSE+SKDCLAK SS T    QIK DREDISS SKSG+DD SK+G SPK RKKG+LK GNDNQSTLF YFGRK
Subjt:  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
TrEMBL top hitse value%identityAlignment
A0A0A0K6X8 Uncharacterized protein2.5e-2574.74Show/hide
Query:  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
        NTSVKPE S S EEH+R+VN  ASSE+SKDCLAK SS T    QIK DREDISS+ KSGMDD SK+G SPKIRKKG+LKTGNDNQ TLF YFG+K
Subjt:  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK
A0A5A7UR90 Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X22.8e-2466.06Show/hide
Query:  KLKNDRKMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQS
        K K       +   NTSVKPE S S EEH+R+ NL ASSE+S+DCLAK SSVT    QIK DREDISS SKSG+DD SK G  PKIRKKG+LKTGNDNQ 
Subjt:  KLKNDRKMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVT--VSQIKWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQS

Query:  TLFQYFGRK
        TL  YFGRK
Subjt:  TLFQYFGRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCGGAAGAGCCAGTTGTACTCTTGGAGCTGATGACATCCCAAGGGCCTACCACCGCACCCTAAACATGGACCGTTTTATTGAAATGGCAGTTACTGTTTTTGTTAC
CTGTGGTCTGGGAGGCTTTCTTGAATTTGTTATCATTGTTTTTGCCGATAAGCTAAAGAATGATAGAAAAATGAACACTCAAATTCCCCGTAACACATCTGTGAAACCTG
AGCCATCGGAAAGTCCAGAAGAACACGAAAGAGATGTAAACCTTAGAGCTTCATCTGAAAAATCAAAGGATTGTCTTGCAAAGCGTTCTTCCGTGACTGTATCTCAAATA
AAATGGGACCGTGAAGATATCTCATCTGAGTCAAAAAGTGGCATGGATGACTGTAGTAAGATTGGCATTAGTCCAAAGATAAGGAAAAAGGGAAGCTTGAAGACTGGTAA
TGACAACCAATCAACCCTCTTTCAATACTTTGGGAGAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCGGAAGAGCCAGTTGTACTCTTGGAGCTGATGACATCCCAAGGGCCTACCACCGCACCCTAAACATGGACCGTTTTATTGAAATGGCAGTTACTGTTTTTGTTAC
CTGTGGTCTGGGAGGCTTTCTTGAATTTGTTATCATTGTTTTTGCCGATAAGCTAAAGAATGATAGAAAAATGAACACTCAAATTCCCCGTAACACATCTGTGAAACCTG
AGCCATCGGAAAGTCCAGAAGAACACGAAAGAGATGTAAACCTTAGAGCTTCATCTGAAAAATCAAAGGATTGTCTTGCAAAGCGTTCTTCCGTGACTGTATCTCAAATA
AAATGGGACCGTGAAGATATCTCATCTGAGTCAAAAAGTGGCATGGATGACTGTAGTAAGATTGGCATTAGTCCAAAGATAAGGAAAAAGGGAAGCTTGAAGACTGGTAA
TGACAACCAATCAACCCTCTTTCAATACTTTGGGAGAAAATAG
Protein sequenceShow/hide protein sequence
MCGRASCTLGADDIPRAYHRTLNMDRFIEMAVTVFVTCGLGGFLEFVIIVFADKLKNDRKMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVTVSQI
KWDREDISSESKSGMDDCSKIGISPKIRKKGSLKTGNDNQSTLFQYFGRK