| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG7014568.1 DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. argyrosperma] | 1.6e-174 | 100 | Show/hide |
Query: MEFSYRTLHPYGTLHLRKTWNGTESVWDWMELRLVSSFGQEAACVRLLEPSGMDVFWQQLSFTAVAAVFLPCRLLLLFSSSVSLLSPPTFFRAFCCRVTP
MEFSYRTLHPYGTLHLRKTWNGTESVWDWMELRLVSSFGQEAACVRLLEPSGMDVFWQQLSFTAVAAVFLPCRLLLLFSSSVSLLSPPTFFRAFCCRVTP
Subjt: MEFSYRTLHPYGTLHLRKTWNGTESVWDWMELRLVSSFGQEAACVRLLEPSGMDVFWQQLSFTAVAAVFLPCRLLLLFSSSVSLLSPPTFFRAFCCRVTP
Query: SGLHRFLVVTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTY
SGLHRFLVVTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTY
Subjt: SGLHRFLVVTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTY
Query: TNRMKTENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVTDPVARYYGLKRGQVVKIIR
TNRMKTENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVTDPVARYYGLKRGQVVKIIR
Subjt: TNRMKTENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVTDPVARYYGLKRGQVVKIIR
Query: PSETAGRYVTYRYVV
PSETAGRYVTYRYVV
Subjt: PSETAGRYVTYRYVV
|
|
| XP_022143609.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia] | 1.9e-100 | 95.15 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVLSEEEITRLFRIRKTVLQMLKDR YFVGDFEIDMSREQFKHKYGE+MKREDIVINKA+RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMK+ENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEISSKFHLEVFQEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| XP_022953770.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] | 2.7e-102 | 97.09 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKRED+VINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| XP_022959553.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] | 8.2e-99 | 92.72 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKREDIVINKAKRNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEIS+KFHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| XP_022991826.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] | 2.1e-102 | 97.57 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A6J1CPU1 DNA-directed RNA polymerases II and IV subunit 5A-like | 9.4e-101 | 95.15 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVLSEEEITRLFRIRKTVLQMLKDR YFVGDFEIDMSREQFKHKYGE+MKREDIVINKA+RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMK+ENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEISSKFHLEVFQEAELLVN+KDHVLVPEHQLLTNEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| A0A6J1GQK9 DNA-directed RNA polymerases II and IV subunit 5A-like | 1.3e-102 | 97.09 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKRED+VINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| A0A6J1H699 DNA-directed RNA polymerases II and IV subunit 5A-like | 4.0e-99 | 92.72 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKREDIVINKAKRNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEIS+KFHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| A0A6J1JRV4 DNA-directed RNA polymerases II and IV subunit 5A-like | 1.0e-102 | 97.57 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| A0A6J1KT45 DNA-directed RNA polymerases II and IV subunit 5A-like | 4.0e-99 | 92.72 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
MVL+EEEITRLFR+RKTVLQMLKDRGYFVGDFE+DMSREQFK+KYGESMKREDIVINKAKRNDSSDQIY+FFPEE KVGVKTMKTYTNRMK+ENVFRAIL
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
VVQQNLTPFARTCISEIS+KFHLEVFQEAELLVN+KDHVLVPEHQLL+NEEKKTLLERYTVKET QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYRYVV
Subjt: TYRYVV
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| B0BNE2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 6.0e-52 | 50.97 | Show/hide |
Query: EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAI
EEE RL++IRKT++Q+ DRGY V E+D + E+FK ++G+ +R D+ + A +D +DQ++VFFPEE KVG+KT+K Y RM+ EN+ RA+
Subjt: EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAI
Query: LVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYYGLKRGQVVKIIRPSETAGRY
+VVQQ +TP A+ + +++ K+ LE F + ELL+N+ +H LVPEH ++T EE LL RY ++E+Q+ DPVARY+G+KRGQVVKIIRPSETAGRY
Subjt: LVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYYGLKRGQVVKIIRPSETAGRY
Query: VTYRYV
+TYR V
Subjt: VTYRYV
|
|
| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 2.6e-87 | 78.54 | Show/hide |
Query: VLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILV
+L+EEE+ RL+RI+KT++QML+DRGYF+ D E+ M+++QF K+G++MKRED+V KAKRND+SDQ+Y+FFP+E KVGVKTMK YTNRMK+ENVFRAILV
Subjt: VLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILV
Query: VQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYVT
VQQNLTPFARTCISEISSKFHLEVFQEAE+LVN+K+HVLVPEHQ+LT EEKKTLLERYTVKET QVTDP+ARY+GLKRGQVVKIIRPSETAGRYVT
Subjt: VQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYVT
Query: YRYVV
YRYVV
Subjt: YRYVV
|
|
| Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.7e-51 | 50.49 | Show/hide |
Query: EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAI
EEE RL++IRKT++Q+ DRGY V E+D + E+F+ ++G+ +R D+ + A +D +DQ++VFFPEE KVG+KT+K Y RM+ EN+ RA+
Subjt: EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAI
Query: LVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYYGLKRGQVVKIIRPSETAGRY
+VVQQ +TP A+ + +++ K+ LE F + ELL+N+ +H LVPEH ++T EE LL RY ++E Q+ DPVARY+G+KRGQVVKIIRPSETAGRY
Subjt: LVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYYGLKRGQVVKIIRPSETAGRY
Query: VTYRYV
+TYR V
Subjt: VTYRYV
|
|
| Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 6.0e-52 | 50.97 | Show/hide |
Query: EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAI
EEE RL++IRKT++Q+ DRGY V E+D + E+FK ++G+ +R D+ + A +D +DQ++VFFPEE KVG+KT+K Y RM+ EN+ RA+
Subjt: EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGES-----MKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAI
Query: LVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYYGLKRGQVVKIIRPSETAGRY
+VVQQ +TP A+ + +++ K+ LE F + ELL+N+ +H LVPEH ++T EE LL RY ++E+Q+ DPVARY+G+KRGQVVKIIRPSETAGRY
Subjt: LVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQVT-----DPVARYYGLKRGQVVKIIRPSETAGRY
Query: VTYRYV
+TYR V
Subjt: VTYRYV
|
|
| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.3e-51 | 52.61 | Show/hide |
Query: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGE-----SMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENV
M E E RL+RIRKTVLQM+ DRGY V E+D E FK +YG+ R D+ I A +D +DQ++VFFPE+ K+G+KT+K +M+ +N+
Subjt: MVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGE-----SMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENV
Query: FRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQVVKIIRPSET
RAI+VVQ +TP A+ I +++ K+ LE F EAEL+VN+ +H LVPEH ++T EEK LL RY +K++Q+ DPVARY+GL+RGQVVKIIRPSET
Subjt: FRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQVVKIIRPSET
Query: AGRYVTYRYVV
AGRY+TYR VV
Subjt: AGRYVTYRYVV
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 2.8e-28 | 36.79 | Show/hide |
Query: VTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTY-TNRMKTE
+ V + + S E + + R+T ++ML+DRGY V D +I++S +QF+ YGE + + I+ R DSS +I V F V V M+ + + E
Subjt: VTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTY-TNRMKTE
Query: NVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQVVKIIRPS
N+ ILV+Q ++T A + S F +E+F+ +LLVNV HVL P+HQ+L ++EK++LL++++++E Q+ DP+ RYYGL+ GQV+K+
Subjt: NVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQVVKIIRPS
Query: ETAGRYVTYRYV
E + +VTYR V
Subjt: ETAGRYVTYRYV
|
|
| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.8e-88 | 78.54 | Show/hide |
Query: VLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILV
+L+EEE+ RL+RI+KT++QML+DRGYF+ D E+ M+++QF K+G++MKRED+V KAKRND+SDQ+Y+FFP+E KVGVKTMK YTNRMK+ENVFRAILV
Subjt: VLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTENVFRAILV
Query: VQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYVT
VQQNLTPFARTCISEISSKFHLEVFQEAE+LVN+K+HVLVPEHQ+LT EEKKTLLERYTVKET QVTDP+ARY+GLKRGQVVKIIRPSETAGRYVT
Subjt: VQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKET-----QVTDPVARYYGLKRGQVVKIIRPSETAGRYVT
Query: YRYVV
YRYVV
Subjt: YRYVV
|
|
| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 6.6e-22 | 31.84 | Show/hide |
Query: EITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTE-NVFRAILVVQQN
E R + R T +ML+DRGY V + E+ ++ +F+ +GE + E + I R+D +I V F + + VK+++ ++ + ILV+Q
Subjt: EITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKTE-NVFRAILVVQQN
Query: LTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
+ FA+ ++ + F +E F +LLVN+ H+ P+ ++L EEK+ LL ++ +++ Q+ D RYYGLK+ QVVKI E G +VTYR +
Subjt: LTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV
Query: V
+
Subjt: V
|
|
| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 8.9e-27 | 35.68 | Show/hide |
Query: VVTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKT-YTNRMKT
V+ ++ + LS EE R + R+ LQML+DRGY V D +I++S F+ YGE + + I+ R+DS+ ++ + F V V +++ + +
Subjt: VVTVTNKMVLSEEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESMKREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTMKT-YTNRMKT
Query: ENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQVVKIIRP
E + ILV+Q ++T A I S F +E+FQ +LLVN+ H L P+HQ+L +EEK TLL++++++E Q+ D + RYYGL++GQVVK+
Subjt: ENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQV-----TDPVARYYGLKRGQVVKIIRP
Query: SETAGRYVTYRYV
E +V +R V
Subjt: SETAGRYVTYRYV
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 2.2e-41 | 44.17 | Show/hide |
Query: EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESM---KREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTM-KTYTNRMKTENVFRAIL
++EITR+F++R+TVLQML+DRGY + + ++++ RE+F ++ ++M +E + ++ K + +D+IYVF+PE KVGV + K +M+ + V R I+
Subjt: EEEITRLFRIRKTVLQMLKDRGYFVGDFEIDMSREQFKHKYGESM---KREDIVINKAKRNDSSDQIYVFFPEEQKVGVKTM-KTYTNRMKTENVFRAIL
Query: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQ-----VTDPVARYYGLKRGQVVKIIRPSETAGRYV
VV +T AR +SE++ +EVF+EAEL+ N+ +H LV ++ +L ++ KK LL YTV++TQ VTDP+ARYYGLKRGQVVKI R T+ Y
Subjt: VVQQNLTPFARTCISEISSKFHLEVFQEAELLVNVKDHVLVPEHQLLTNEEKKTLLERYTVKETQ-----VTDPVARYYGLKRGQVVKIIRPSETAGRYV
Query: TYRYVV
TYR+ V
Subjt: TYRYVV
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