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Carg11558 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11558
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDUF2301 domain-containing protein
Genome locationCarg_Chr17:9723801..9725007
RNA-Seq ExpressionCarg11558
SyntenyCarg11558
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0016874 - ligase activity (molecular function)
InterPro domainsIPR019275 - Protein of unknown function DUF2301


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039859.1 DUF2301 domain-containing protein [Cucumis melo var. makuwa]1.7e-0938.17Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AG+S+VQYVVDNPSAVWF+GPL AA TGLVFKE L                                               ++ +   K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++NA+ E+E+KALI KLEQQ VS+N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

KAG7014615.1 hypothetical protein SDJN02_24794, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-40100Show/hide
Query:  MRLCRNTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLMKQANNKKKEDTDGRVYNAVEEDEEKALIPKLEQQEVSKNGD
        MRLCRNTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLMKQANNKKKEDTDGRVYNAVEEDEEKALIPKLEQQEVSKNGD
Subjt:  MRLCRNTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLMKQANNKKKEDTDGRVYNAVEEDEEKALIPKLEQQEVSKNGD

XP_004140559.1 uncharacterized protein LOC101223108 [Cucumis sativus]2.6e-1039.69Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AG+S+VQYVVDNPSAVWF+GPL AA TGLVFKE L                                               ++ +   K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++NA+ EDE+KALI KLEQQEVS+N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

XP_008459924.1 PREDICTED: uncharacterized protein LOC103498896 [Cucumis melo]1.7e-0938.17Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AG+S+VQYVVDNPSAVWF+GPL AA TGLVFKE L                                               ++ +   K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++NA+ E+E+KALI KLEQQ VS+N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

XP_023004744.1 uncharacterized protein LOC111497955 [Cucurbita maxima]3.7e-0938.93Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AGDS+VQYVVDNPSAVWFIGPL AA TGLVFKE L                                               ++     K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++N + EDE+KALI KLEQQE+ +N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

TrEMBL top hitse value%identityAlignment
A0A0A0KC45 Uncharacterized protein1.2e-1039.69Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AG+S+VQYVVDNPSAVWF+GPL AA TGLVFKE L                                               ++ +   K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++NA+ EDE+KALI KLEQQEVS+N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

A0A1S3CBS2 uncharacterized protein LOC1034988968.0e-1038.17Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AG+S+VQYVVDNPSAVWF+GPL AA TGLVFKE L                                               ++ +   K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++NA+ E+E+KALI KLEQQ VS+N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

A0A5D3DMA3 DUF2301 domain-containing protein8.0e-1038.17Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AG+S+VQYVVDNPSAVWF+GPL AA TGLVFKE L                                               ++ +   K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++NA+ E+E+KALI KLEQQ VS+N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

A0A6J1KX72 uncharacterized protein LOC1114979551.8e-0938.93Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AGDS+VQYVVDNPSAVWFIGPL AA TGLVFKE L                                               ++     K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++N + EDE+KALI KLEQQE+ +N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

E5GB55 Uncharacterized protein8.0e-1038.17Show/hide
Query:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG
        N  Q AG+S+VQYVVDNPSAVWF+GPL AA TGLVFKE L                                               ++ +   K+D   
Subjt:  NTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLM----------------------------------------------KQANNKKKEDTDG

Query:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD
        +   ++NA+ E+E+KALI KLEQQ VS+N D
Subjt:  R---VYNAVEEDEEKALIPKLEQQEVSKNGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G28140.1 unknown protein3.0e-0974.29Show/hide
Query:  AGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVL
        AGD++V YVVD+PSAVWF+GPL A+ TGLVFKE L
Subjt:  AGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTATGTAGGAATACTGTGCAAAAAGCTGGGGACAGCATAGTGCAGTATGTTGTTGATAATCCATCGGCAGTCTGGTTTATTGGTCCTCTCTCTGCAGCACCGAC
TGGACTAGTCTTCAAAGAAGTCTTGATGAAGCAGGCAAATAATAAGAAGAAAGAAGATACTGATGGCCGAGTCTACAATGCAGTTGAAGAGGACGAAGAGAAGGCCTTGA
TTCCAAAGCTTGAGCAGCAAGAGGTTAGTAAGAATGGTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGATTATGTAGGAATACTGTGCAAAAAGCTGGGGACAGCATAGTGCAGTATGTTGTTGATAATCCATCGGCAGTCTGGTTTATTGGTCCTCTCTCTGCAGCACCGAC
TGGACTAGTCTTCAAAGAAGTCTTGATGAAGCAGGCAAATAATAAGAAGAAAGAAGATACTGATGGCCGAGTCTACAATGCAGTTGAAGAGGACGAAGAGAAGGCCTTGA
TTCCAAAGCTTGAGCAGCAAGAGGTTAGTAAGAATGGTGATTAG
Protein sequenceShow/hide protein sequence
MRLCRNTVQKAGDSIVQYVVDNPSAVWFIGPLSAAPTGLVFKEVLMKQANNKKKEDTDGRVYNAVEEDEEKALIPKLEQQEVSKNGD