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Carg11563 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11563
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlight-regulated protein-like
Genome locationCarg_Chr17:9751961..9753344
RNA-Seq ExpressionCarg11563
SyntenyCarg11563
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576101.1 Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.2e-7098.54Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAK G
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPE
        GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDP+
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPE
XP_022953556.1 light-regulated protein-like [Cucurbita moschata]3.7e-75100Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
XP_022991991.1 light-regulated protein, chloroplastic-like [Cucurbita maxima]1.4e-7498.6Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAAPSLAHPSSCYLLPPTTKLMAFS+PSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSS+SSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
XP_023547464.1 light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]5.4e-7498.6Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRS RRHPTSQTHRPILKAKASAVGQDPSTVDYSS+SSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
XP_038906788.1 light-regulated protein, chloroplastic-like [Benincasa hispida]3.9e-6488.81Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A PSSC LLPPT K MAFS+ SRS+ RHPTSQT RPILKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKK 
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSV+E VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
TrEMBL top hitse value%identityAlignment
A0A1S3CBQ8 light-regulated protein-like2.1e-5581.82Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A P SC LLPPT KLMAFSI +RS+ R       +  LKAKASAVGQ+PSTVDYSSMSSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
A0A5D3DLY7 Light-regulated protein-like1.6e-5581.82Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A P SC LLPPT KLMAFSI +RS+ R       +  LKAKASAVGQ+PSTVDYSSMSSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
A0A6J1GNA5 light-regulated protein-like1.8e-75100Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
A0A6J1JSC1 light-regulated protein, chloroplastic-like6.9e-7598.6Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQLQAAPSLAHPSSCYLLPPTTKLMAFS+PSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSS+SSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Q39636 CR9 protein3.2e-5682.52Show/hide
Query:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG
        MQ QAA S+A P SC LLPPT K MAFSIP+RSM R       +  LKAKASAVGQDPSTVDYSSMSSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+E V+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEAVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic1.5e-2360Show/hide
Query:  LKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGS--VSEAVDREYLQYDSPKTVFPAEACDDLGGEFC
        ++A A+AV  + + VDYSS  SVFP EAC+ +GGEAC+V+MYPE KL   A    S   +E VDR+YL YD P TVFP EACDDLGGEFC
Subjt:  LKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGS--VSEAVDREYLQYDSPKTVFPAEACDDLGGEFC
Q96500 Light-regulated protein 1, chloroplastic5.7e-2649.25Show/hide
Query:  SLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDY-SSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEA
        S++ P   +LLP  TK    S    S+R + +S          +S++  DP+TVDY SS+ SVFPAEACE + G AC  ++YPEVKL  +       SE 
Subjt:  SLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDY-SSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEA

Query:  VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
        VDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like4.0e-2749.25Show/hide
Query:  SLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDY-SSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEA
        S++ P   +LLP  TK    S    S+R + +S          +S++  DP+TVDY SS+ SVFPAEACE + G AC  ++YPEVKL  +       SE 
Subjt:  SLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDY-SSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEA

Query:  VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
        VDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTGCAGGCAGCTCCTTCCCTGGCACATCCATCTTCATGCTACCTTCTCCCACCAACTACCAAATTGATGGCGTTCTCAATCCCATCTAGGTCCATGCGAAGGCA
CCCCACCTCACAAACTCATCGCCCCATCCTAAAAGCGAAGGCAAGTGCGGTTGGACAAGACCCTTCAACGGTTGACTACAGCTCCATGTCCTCTGTTTTTCCAGCAGAGG
CTTGTGAAACTGTTGGAGGTGAAGCTTGTGATGTCGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCTAAAAAGGGAGGCAGTGTCTCAGAGGCAGTTGATAGAGAG
TATCTACAATATGACAGTCCTAAGACAGTCTTTCCTGCGGAGGCTTGTGATGATCTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAGGGAGTTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATTAACGAGATATCTTGCCATCTTTATCTGTTGAGCCTTATAAATCTGAATTCCACTCTAAAGATACATCCAGGCATCAAGTTCGCAGTAGACCGCCATTGTTCATCATG
CAGTTGCAGGCAGCTCCTTCCCTGGCACATCCATCTTCATGCTACCTTCTCCCACCAACTACCAAATTGATGGCGTTCTCAATCCCATCTAGGTCCATGCGAAGGCACCC
CACCTCACAAACTCATCGCCCCATCCTAAAAGCGAAGGCAAGTGCGGTTGGACAAGACCCTTCAACGGTTGACTACAGCTCCATGTCCTCTGTTTTTCCAGCAGAGGCTT
GTGAAACTGTTGGAGGTGAAGCTTGTGATGTCGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCTAAAAAGGGAGGCAGTGTCTCAGAGGCAGTTGATAGAGAGTAT
CTACAATATGACAGTCCTAAGACAGTCTTTCCTGCGGAGGCTTGTGATGATCTGGGTGGTGAATTCTGTGATCCAGAGTATCAAAAGGGAGTTTACTAGAAAAACTTGTT
GGGAAAAGGAGCTTCCAGTTGTTTTCTTTTCCTCTACTCTTTACTGACTTCCTATTATGCTTGTAAATGATTAGTAGACTACGAAGTTCTTCAATACTGATCAATACTTG
GTACTCTCCAACAACATAAAAAACTATCCGAGTTTTTTGTGATCATCTGAAGGGCAATAATCTTCCCAAAACAGCACTCAAACTGTTTCAAGATTGAGACATCGAAATAC
TTGATTGATTATGATTATGAATAGTAAGAATATACAGACAGCAATTAATCACACTTACAAATGACGCGCTGAAGGTGCCAAGATTGTTAATACTTCTCAAGATGAACCAT
GCAGATCCATCACCTGCAACATTAACCACAATTATTTCAATGACAGAAGGTCAAAATGGCATATCAGTTAACAATCATGAAGGCCACACAATCAGTTTGCTCCATTGCTA
AGTCTCATCCACGAGGATCAACGCATTTTTGTTGACATCGTGTTTTAACGAGATGGCGATACGCTGAGAAATATGTCTTAAATCCTTCGTCGTCCTCCAAATACCTTGGA
ATTCGGAATTAGAGAATACAGGCTGTGAAGAGTATCAGACTGCATAAGCCATGGCTAAGGCTAAAAAAGATGCGACATTTTTTAGGTTTATAAACTTCAATTTTTTTTTT
T
Protein sequenceShow/hide protein sequence
MQLQAAPSLAHPSSCYLLPPTTKLMAFSIPSRSMRRHPTSQTHRPILKAKASAVGQDPSTVDYSSMSSVFPAEACETVGGEACDVEMYPEVKLKPEAKKGGSVSEAVDRE
YLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY