CuGenDBv2

Gene ID	Carg11571
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LITAF domain-containing protein
Genome location	Carg_Chr17:9788404..9791041
RNA-Seq Expression	Carg11571
Synteny	Carg11571
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]

4.9e-69

90.98

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

9.2e-68

89.47

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

XP_008459901.1 PREDICTED: uncharacterized protein LOC103498881 [Cucumis melo]

1.9e-68

90.23

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPN IFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

XP_022954275.1 GSH-induced LITAF domain protein [Cucurbita moschata]

9.8e-78

100

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]

6.4e-77

98.51

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIPFYVGNN+YQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEKSD CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

4.5e-68

89.47

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG P GVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

A0A1S3CCH3 uncharacterized protein LOC103498881

9.0e-69

90.23

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPN IFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

2.4e-69

90.98

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVG+P YVGNN YQAGQIPPNAIFG PQGVPI QTMYRDTPAP+ CVYCGNSGLT+IRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEK D CAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALP

A0A6J1GS01 GSH-induced LITAF domain protein

4.8e-78

100

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

A0A6J1JVN9 GSH-induced LITAF domain protein

3.1e-77

98.51

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVGIPFYVGNN+YQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEKSD CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

6.4e-56

69.4

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+G+P+Y G N YQAG +PPNAI+G P G PI QT+YRDTPAP+ C+YCGN+GLT++RSK  +AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        CP C  KV DFEKSD C VMDPP W QPSFALPA
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

4.6e-57

69.4

Show/hide

Query:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+G+P+Y G N YQAG +PPNAI+G P G PI QT+YRDTPAP+ C+YCGN+GLT++RSK  +AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA
        CP C  KV DFEKSD C VMDPP W QPSFALPA
Subjt:  CPSCKEKVGDFEKSDVCAVMDPPHWTQPSFALPA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGCAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATCTTTGGCCATCCCCAGGGAGT
TCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGATCGAAGATAAGTTTAGCTGCTGTCG
TTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTATCACTATTGTCCCAGCTGCAAGGAAAAGGTTGGTGAT
TTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTGA

mRNA sequence

Show/hide mRNA sequence

TTCCATCGTAATTCTACCGTTTCTCGTTTGTTCTCCTTCAACAATTTCATTGACTTCCATTCCAACAACTTCCAGAATCGCCGGCCCAGCAGCACAGAGAAAAAGCTTAG
GGAAAATGTCGAAGAACGATGAGCCGGTCGTCGGAATTCCATTCTATGTTGGCAATAACGCTTATCAGGCTGGACAGATCCCTCCGAACGCCATCTTTGGCCATCCCCAG
GGAGTTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCTTACTGCTGTGTTTATTGTGGAAATTCCGGTCTCACCTCCATCAGATCGAAGATAAGTTTAGCTGC
TGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGATTGCCTTTGGCATAAGTATCACTATTGTCCCAGCTGCAAGGAAAAGGTTG
GTGATTTTGAGAAATCGGATGTGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTTGCATTGCCTGCCTGATTTTTACGAGCTGCTAGTTTATCGTGTGGC
TATTTTGCATTGTCTGCAGTCAGTATTTGCTATACTCTTGTGCTATTTGATAGAACCAAGTACATGTTTTTTTTATTTTCTATACGCTTGTGCTATTTGATAGAACCAAG
TACATGTTTTTTATTTGCTATACTCTTGTGCTATTTTTGAGATGTTCTTGTTACAATTAGGGATAGGCAAGGTTTGGATACAACTGTGATAGAATCAAGTACATGTTTTT
TTTTATAACTTACCGCTTGTAAATAACTTGTTCTTACATTGGCATTGTTGTTTATATATAATACCGCTAGCTTAGTCTAGAGGAATCATTTCATAGACCTCTTGATCATT
CACCTCATAAGTTGAAATGGTATGCGTTTGTTCAATTAATTTCCCGTGGCCATTCACTATCTGCATCTCCTGACACCATTTGTTCTAACCTCTCTCAAATTACATTTTGA
GCATGCACCTCATCATCTGGATGAATCAACGATGGGATTTTCTTTTTCTTCTTTATTTGGCTATCGATATCGAAATGAAGTCGAGCATAATAGATGGTTTGCTATTGCCT
GCTTGGTTTTGAGGGGACTTGGATTCTGATGAGGGATGATGATCTGGGATCACGCAAGTAAACAATGAGAAACATCTCGGAAAAGATGGTATACCTGAGTTCAAGGGGGT
CTTGCCCAGATGCAGATGTAGAGAAAGACAATGGAAGTCGATTGCAGAGGTTTTCAATCTGGAAGCGAAAGTTCGGCATGG

Protein sequence

Show/hide protein sequence

MSKNDEPVVGIPFYVGNNAYQAGQIPPNAIFGHPQGVPIHQTMYRDTPAPYCCVYCGNSGLTSIRSKISLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGD
FEKSDVCAVMDPPHWTQPSFALPA

Carg11571 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome