CuGenDBv2

Gene ID	Carg11639
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Genome location	Carg_Chr02:2980894..2984337
RNA-Seq Expression	Carg11639
Synteny	Carg11639
Gene Ontology terms	GO:0016874 - ligase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605258.1 hypothetical protein SDJN03_02575, partial [Cucurbita argyrosperma subsp. sororia]

7.2e-84

99.44

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKRKKSKSSGI+TVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

KAG7035221.1 hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-84

100

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

XP_022947715.1 uncharacterized protein LOC111451498 [Cucurbita moschata]

4.6e-83

98.88

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK ETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

XP_023006926.1 uncharacterized protein LOC111499570 [Cucurbita maxima]

9.7e-81

96.07

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD NDTDSDAPEEFTAEQGIQQDEEIRK+QKESSARVVREGKERRRQWAEKKTPR SKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKT+R+KSKSSGIETVLLN RAPSQC QNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

XP_023533260.1 uncharacterized protein LOC111795202 [Cucurbita pepo subsp. pepo]

1.3e-80

96.63

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD NDTDSDAPEEFTAEQGIQQDEEI KVQKESSARVVREGKERRRQWAEKKTPR SKKGETVEDVAETPRH+DQVSKLGML SNLVQLLAEREKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKR+KSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM07 Uncharacterized protein

4.5e-68

82.02

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKKGE VED+AE PR++D++SKLG LPSN+VQLL +REKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SD GDEKPA K K KRKK+KSSGIETVLLNER PS CLQNSLEFLKKRKMN+ RSS+VL N NQA RLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

A0A5A7TWK6 Uncharacterized protein

2.1e-65

81.01

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQ ES ARV+REGKERRR WAEKKTPR SKKGE VED+AE PR++D+VSKLG LPSN+VQLL +REKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSK-SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SD GDEKPA K K KRKK+K SSGIETVLL+ER PS CLQNSLEFLKKRKMN+ RSS+VL+N NQA RLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSK-SSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

A0A6J1DXW1 uncharacterized protein LOC111025162

8.8e-72

87.57

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD  DTDSDAPEEFTAEQGIQQD+EI KVQ ES ARVVREGKERRR WAEKKTPR SKKGETVEDVAE P H DQ SKLGMLPSNLVQLLA+REKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTK
        SDPGDEKPAAK KTKRKK+KSSGIETV+LN+R P+QCLQNS+EFLKKRKMNIPRSSSVLDN NQALR LSSSGLLTK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTK

A0A6J1G7P4 uncharacterized protein LOC111451498

2.2e-83

98.88

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK ETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

A0A6J1KZ49 uncharacterized protein LOC111499570

4.7e-81

96.07

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Query:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
        MSD NDTDSDAPEEFTAEQGIQQDEEIRK+QKESSARVVREGKERRRQWAEKKTPR SKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS
Subjt:  MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS

Query:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        SDPGDEKPAAKSKT+R+KSKSSGIETVLLN RAPSQC QNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
Subjt:  SDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G37090.1 unknown protein

7.0e-29

46.45

Show/hide

Query:  MSDS--NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAERE
        MSD+   D+DSDAPEE T EQ   ++E + K+Q+E+  RV RE KERR+  AE+ T R S+K E +EDV   E P  N + ++  G L  +++  LAERE
Subjt:  MSDS--NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAERE

Query:  KQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        KQ   SD  +E+       ++KK KSSGIETV+  E  P +CL+  L+FLK R+  +PRSSSV+ NS QALRL + + L  K+
Subjt:  KQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

AT4G37090.2 unknown protein

1.0e-27

46.45

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Query:  MSDS--NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAERE
        MSD+   D+DSDAPEE T EQ   ++E + K+Q+E+  RV RE KERR+  AE+ T R S+K E +EDV   E P  N + ++  G L  +++  LAERE
Subjt:  MSDS--NDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVA--ETPRHNDQ-VSKLGMLPSNLVQLLAERE

Query:  KQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK
        KQ   SD  +E+       ++KK KSSGIETV+  E  P +CL+  L+FLK R+  +PRSSSV+ NS QALRL + + L  K+
Subjt:  KQVFSSDPGDEKPAAKSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

Sequences

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CDS sequence

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ATGTCGGACTCAAACGATACCGATTCCGACGCCCCCGAAGAGTTCACCGCCGAGCAGGGAATACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAGCGCTAG
GGTTGTCCGTGAAGGTAAAGAACGTCGTAGACAGTGGGCCGAAAAGAAAACACCACGCGCATCTAAAAAAGGCGAAACTGTCGAAGATGTAGCAGAAACCCCTAGACACA
ATGATCAAGTTAGCAAGTTGGGAATGCTTCCCAGTAATCTTGTCCAACTGCTTGCCGAGCGTGAGAAACAAGTTTTCTCATCAGACCCAGGTGACGAAAAGCCTGCAGCT
AAATCAAAAACAAAGAGGAAGAAAAGCAAAAGCTCTGGGATTGAAACGGTTCTTTTAAACGAGAGAGCACCATCTCAATGCTTACAGAACTCGTTGGAATTTTTGAAGAA
AAGGAAGATGAATATTCCAAGGTCATCATCGGTTCTCGACAATTCTAACCAAGCGTTACGCCTTCTTTCTTCATCGGGCCTTTTAACTAAGAAATAA

mRNA sequence

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Protein sequence

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MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKKGETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFSSDPGDEKPAA
KSKTKRKKSKSSGIETVLLNERAPSQCLQNSLEFLKKRKMNIPRSSSVLDNSNQALRLLSSSGLLTKK

Carg11639 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome