CuGenDBv2

Gene ID	Carg11729
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L20
Genome location	Carg_Chr02:3765892..3767275
RNA-Seq Expression	Carg11729
Synteny	Carg11729
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7035310.1 rplT, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-63

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

XP_022149620.1 uncharacterized protein LOC111018005 [Momordica charantia]

4.6e-61

94.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVV PPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

XP_022947351.1 uncharacterized protein LOC111451238 [Cucurbita moschata]

3.2e-62

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGL KENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

XP_023007267.1 uncharacterized protein LOC111499805 [Cucurbita maxima]

6.4e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

XP_023512215.1 uncharacterized protein LOC111777010 [Cucurbita pepo subsp. pepo]

6.0e-61

93.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKD +S+++
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D684 50S ribosomal protein L20

2.2e-61

94.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVV PPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

A0A6J1FUI3 50S ribosomal protein L20

3.8e-61

93.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKD +S+++
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

A0A6J1G662 50S ribosomal protein L20

1.5e-62

98.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGL KENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

A0A6J1JCG1 50S ribosomal protein L20

2.9e-61

94.4

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKD +S+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

A0A6J1KY75 50S ribosomal protein L20

3.1e-63

99.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KENIQLNRKVLSELSMHEPYSFKSLVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVVL
        ISRNAFPGNKNVVFPPKKDGISVVL
Subjt:  ISRNAFPGNKNVVFPPKKDGISVVL

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

1.3e-31

63.37

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  I+++RKVLS+++  EP SFK+LV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q2GHR2 50S ribosomal protein L20

6.3e-29

59.41

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL+  N+ LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

7.4e-30

61.39

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL+  NI LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L20

8.2e-29

57.43

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL+  NI LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Q5HC39 50S ribosomal protein L20

8.2e-29

57.43

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL+  NI LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

6.8e-55

83.06

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGL KENIQLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGISVV
        +SR +FPGNKNVV   +K  IS +
Subjt:  ISRNAFPGNKNVVFPPKKDGISVV

ATCG00660.1 ribosomal protein L20

8.7e-10

38.2

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Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLTKENIQLNRKVLSELSM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L+++++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLTKENIQLNRKVLSELSM

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGCTTCAGAGGCAGGGCTAAGAATTGCATAAGGATTGCCCGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAG
GGACCGTCGCAATAAGAAGAGAGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGGTAAATTATGGCAATTTCATGCATGGGCTGACGA
AGGAGAACATTCAACTGAATAGAAAAGTATTATCAGAGCTTTCAATGCACGAACCTTACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAG
AATGTAGTGTTTCCCCCAAAGAAGGATGGCATTTCCGTAGTTCTTTAA

mRNA sequence

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Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPYSFKSLVDISRNAFPGNK
NVVFPPKKDGISVVL

Carg11729 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome