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Carg11802 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11802
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSANT domain-containing protein
Genome locationCarg_Chr05:1046809..1047087
RNA-Seq ExpressionCarg11802
SyntenyCarg11802
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598441.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]1.1e-43100Show/hide
Query:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFS
        MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFS
Subjt:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFS

KAG7029384.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]9.8e-45100Show/hide
Query:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFSRL
        MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFSRL
Subjt:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFSRL

XP_022997502.1 protein RADIALIS-like 4 [Cucurbita maxima]4.4e-3793.02Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR
        +SSS WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKP KH S N FLDEEQR
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR

XP_023547022.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]2.0e-3794.12Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQ
        +SSSSWSSKQNKVFENALTVYDKDSPDRWQ LASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKP KHYS N FLDEEQ
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQ

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]1.3e-3387.21Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR
        +SSSSWSSKQNK+FENALTVYDKDSPDRWQKLAS++GGKTAEEVK HY+MLVEDVHNIETGRVPLPNYS   KHYS N FLDEEQR
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein1.2e-3285.23Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSC-NAFLDEEQRQ
        +SSSSWSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYS   KHYS  N F+DEEQRQ
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSC-NAFLDEEQRQ

A0A1S3BBR2 protein RADIALIS-like 48.4e-3487.21Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR
        +SSSSWSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYS   KHYS N FLDEEQR
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR

A0A6J1HEM1 protein RADIALIS-like 63.0e-3195.89Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRK
        +SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS P K
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRK

A0A6J1K580 protein RADIALIS-like 42.1e-3793.02Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR
        +SSS WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKP KH S N FLDEEQR
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR

A0A6J1KQS6 protein RADIALIS-like 41.0e-3183.72Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR
        +SS+ WSSKQNKVFENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYEMLVEDVHNIE GR+PLPNYS   K Y  N FLDEEQR
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.1e-2153.85Show/hide
Query:  SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSC-NAFLDEEQRQFSRL
        SS SW++KQNK FE AL  YD+D+P+RWQ +A  VGGKT EEVKRHYE+LV+D+++IE G VP PNY   R    C N  L +E+++   +
Subjt:  SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSC-NAFLDEEQRQFSRL

Q1A173 Protein RADIALIS-like 63.2e-2270.59Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        +S S W+  QNK+FE AL VYDKD+PDRW  +A +VGGKT EEVKRHY++LVED+ NIETGRVPLPNY
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

Q6NNN0 Protein RADIALIS-like 37.9e-2162.32Show/hide
Query:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        M+SS+SW+ K+NK+FE AL  YD+D+PDRW  +A +VGGK+AEEV+RHYE+L+ DV++IE+GR P PNY
Subjt:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

Q8GW75 Protein RADIALIS-like 52.5e-2271.01Show/hide
Query:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        M+SSSSW+SKQNK+FE AL VYDKD+PDRWQ +A +VG K+AEEVKRHY++LVED+ NIE   VPLP Y
Subjt:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

Q9SIJ5 Protein RADIALIS-like 21.5e-1951.72Show/hide
Query:  SSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFS
        S SW+ KQNK FE AL VYD+D+PDRW  +A +VGGKT EE KR Y++LV D+ +IE G VP P+Y     + +     DEE+R  S
Subjt:  SSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.7e-2371.01Show/hide
Query:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        M+SSSSW+SKQNK+FE AL VYDKD+PDRWQ +A +VG K+AEEVKRHY++LVED+ NIE   VPLP Y
Subjt:  MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

AT1G75250.1 RAD-like 62.3e-2370.59Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        +S S W+  QNK+FE AL VYDKD+PDRW  +A +VGGKT EEVKRHY++LVED+ NIETGRVPLPNY
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

AT1G75250.2 RAD-like 62.3e-2370.59Show/hide
Query:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        +S S W+  QNK+FE AL VYDKD+PDRW  +A +VGGKT EEVKRHY++LVED+ NIETGRVPLPNY
Subjt:  TSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

AT2G21650.1 Homeodomain-like superfamily protein1.1e-2051.72Show/hide
Query:  SSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFS
        S SW+ KQNK FE AL VYD+D+PDRW  +A +VGGKT EE KR Y++LV D+ +IE G VP P+Y     + +     DEE+R  S
Subjt:  SSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFS

AT4G39250.1 RAD-like 11.5e-2253.85Show/hide
Query:  SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSC-NAFLDEEQRQFSRL
        SS SW++KQNK FE AL  YD+D+P+RWQ +A  VGGKT EEVKRHYE+LV+D+++IE G VP PNY   R    C N  L +E+++   +
Subjt:  SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSC-NAFLDEEQRQFSRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCTTCTTCAAGCTGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCAAGTTCCGT
CGGAGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCACAATATCGAGACCGGCAGAGTTCCTTTGCCCAATTACTCTAAACCTCGTA
AACACTATTCCTGCAACGCCTTTCTTGACGAAGAACAAAGGCAATTTTCCCGTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATCTTCTTCAAGCTGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCAAGTTCCGT
CGGAGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCACAATATCGAGACCGGCAGAGTTCCTTTGCCCAATTACTCTAAACCTCGTA
AACACTATTCCTGCAACGCCTTTCTTGACGAAGAACAAAGGCAATTTTCCCGTCTTTAA
Protein sequenceShow/hide protein sequence
MTSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKPRKHYSCNAFLDEEQRQFSRL