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Carg11850 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg11850
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGlutamate receptor
Genome locationCarg_Chr05:788476..789279
RNA-Seq ExpressionCarg11850
SyntenyCarg11850
Gene Ontology termsGO:0034220 - ion transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0015276 - ligand-gated ion channel activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598370.1 Glutamate receptor 2.7, partial [Cucurbita argyrosperma subsp. sororia]6.8e-6684.05Show/hide
Query:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------
        MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE                     
Subjt:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------

Query:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI
            VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDIT QI
Subjt:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI

KAG7029338.1 hypothetical protein SDJN02_07676, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-70100Show/hide
Query:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVEVKAMIGTLTREEVSSIFELHK
        MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVEVKAMIGTLTREEVSSIFELHK
Subjt:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVEVKAMIGTLTREEVSSIFELHK

Query:  ASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI
        ASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI
Subjt:  ASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI

XP_022961654.1 glutamate receptor 2.6-like isoform X3 [Cucurbita moschata]2.3e-3761.88Show/hide
Query:  MFPSLYFFCL-VGFLVLDGL---CSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKV-----------------E
        MF +L FFCL VGF++LDG      T +T+ETHLRC  ++PKR V+MGVIADNSSRVGREQIVAI MA K Y  F NSCH V                 E
Subjt:  MFPSLYFFCL-VGFLVLDGL---CSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKV-----------------E

Query:  VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPT-SFLQMANDITQQI
        V+AM GTLTREEVSSIFELHKAS NI I+SL SAS+VPP T  I T SF+QM NDIT Q+
Subjt:  VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPT-SFLQMANDITQQI

XP_022961655.1 glutamate receptor 2.7-like isoform X4 [Cucurbita moschata]3.0e-6179.39Show/hide
Query:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------
        MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE                     
Subjt:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------

Query:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQ--IPTSFLQMANDITQQI
            VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQ    +SF+QM NDIT Q+
Subjt:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQ--IPTSFLQMANDITQQI

XP_022997326.1 LOW QUALITY PROTEIN: glutamate receptor 2.7-like [Cucurbita maxima]7.0e-6380.98Show/hide
Query:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------
        MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQ P FSNSCHKVE                     
Subjt:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------

Query:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI
            VKAM GTLTREEVS+IFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDIT Q+
Subjt:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI

TrEMBL top hitse value%identityAlignment
A0A6J1HAR4 glutamate receptor 2.7-like isoform X19.4e-3758.93Show/hide
Query:  MFPSLYFFCL-VGFLVLDGL---CSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKV------------------
        MF +L FFCL VGF++LDG      T +T+ETHLRC  ++PKR V+MGVIADNSSRVGREQIVAI MA K Y  F NSCH V                  
Subjt:  MFPSLYFFCL-VGFLVLDGL---CSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKV------------------

Query:  -------EVKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPT-SFLQMANDITQQI
               EV+AM GTLTREEVSSIFELHKAS NI I+SL SAS+VPP T  I T SF+QM NDIT Q+
Subjt:  -------EVKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPT-SFLQMANDITQQI

A0A6J1HCF1 glutamate receptor 2.7-like isoform X29.4e-3758.93Show/hide
Query:  MFPSLYFFCL-VGFLVLDGL---CSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKV------------------
        MF +L FFCL VGF++LDG      T +T+ETHLRC  ++PKR V+MGVIADNSSRVGREQIVAI MA K Y  F NSCH V                  
Subjt:  MFPSLYFFCL-VGFLVLDGL---CSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKV------------------

Query:  -------EVKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPT-SFLQMANDITQQI
               EV+AM GTLTREEVSSIFELHKAS NI I+SL SAS+VPP T  I T SF+QM NDIT Q+
Subjt:  -------EVKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPT-SFLQMANDITQQI

A0A6J1HCW7 Glutamate receptor1.4e-6179.39Show/hide
Query:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------
        MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE                     
Subjt:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------

Query:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQ--IPTSFLQMANDITQQI
            VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQ    +SF+QM NDIT Q+
Subjt:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQ--IPTSFLQMANDITQQI

A0A6J1HEN7 glutamate receptor 2.6-like isoform X31.1e-3761.88Show/hide
Query:  MFPSLYFFCL-VGFLVLDGL---CSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKV-----------------E
        MF +L FFCL VGF++LDG      T +T+ETHLRC  ++PKR V+MGVIADNSSRVGREQIVAI MA K Y  F NSCH V                 E
Subjt:  MFPSLYFFCL-VGFLVLDGL---CSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKV-----------------E

Query:  VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPT-SFLQMANDITQQI
        V+AM GTLTREEVSSIFELHKAS NI I+SL SAS+VPP T  I T SF+QM NDIT Q+
Subjt:  VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPT-SFLQMANDITQQI

A0A6J1K770 LOW QUALITY PROTEIN: glutamate receptor 2.7-like3.4e-6380.98Show/hide
Query:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------
        MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQ P FSNSCHKVE                     
Subjt:  MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVE---------------------

Query:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI
            VKAM GTLTREEVS+IFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDIT Q+
Subjt:  ----VKAMIGTLTREEVSSIFELHKASKNIPIISLSSASIVPPPTKQIPTSFLQMANDITQQI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCCATCTCTTTACTTCTTCTGTTTGGTTGGGTTTCTGGTGTTGGATGGCTTGTGCTCAACGCCTCAGACTAATGAAACCCACCTGAGATGTTCCGGCGAC
CACCCAAAAAGAGCAGTGAAGATGGGAGTTATTGCTGATAATAGCTCAAGAGTGGGGAGGGAACAGATTGTAGCCATTCACATGGCTTTCAAACAATATCCTCTT
TTTTCTAATTCATGCCACAAGGTTGAAGTGAAAGCCATGATTGGAACATTGACAAGGGAGGAAGTATCTTCAATCTTTGAGCTCCACAAAGCCTCCAAGAATATC
CCTATCATATCGTTATCTTCAGCTTCCATAGTACCACCACCGACGAAGCAGATTCCGACGTCATTTCTTCAAATGGCTAACGATATCACCCAACAAATA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCCATCTCTTTACTTCTTCTGTTTGGTTGGGTTTCTGGTGTTGGATGGCTTGTGCTCAACGCCTCAGACTAATGAAACCCACCTGAGATGTTCCGGCGAC
CACCCAAAAAGAGCAGTGAAGATGGGAGTTATTGCTGATAATAGCTCAAGAGTGGGGAGGGAACAGATTGTAGCCATTCACATGGCTTTCAAACAATATCCTCTT
TTTTCTAATTCATGCCACAAGGTTGAAGTGAAAGCCATGATTGGAACATTGACAAGGGAGGAAGTATCTTCAATCTTTGAGCTCCACAAAGCCTCCAAGAATATC
CCTATCATATCGTTATCTTCAGCTTCCATAGTACCACCACCGACGAAGCAGATTCCGACGTCATTTCTTCAAATGGCTAACGATATCACCCAACAAATA
Protein sequenceShow/hide protein sequence
MFPSLYFFCLVGFLVLDGLCSTPQTNETHLRCSGDHPKRAVKMGVIADNSSRVGREQIVAIHMAFKQYPLFSNSCHKVEVKAMIGTLTREEVSSIFELHKASKNI
PIISLSSASIVPPPTKQIPTSFLQMANDITQQI