CuGenDBv2

Gene ID	Carg11866
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein GID2-like
Genome location	Carg_Chr05:697176..697592
RNA-Seq Expression	Carg11866
Synteny	Carg11866
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

8.0e-75

100

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Query:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP
        MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP
Subjt:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP

Query:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

1.4e-58

81.56

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Query:  MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYP
        +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYP
Subjt:  MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYP

Query:  FPPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        FPP+IG     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  FPPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

2.0e-73

98.55

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Query:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP
        MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP
Subjt:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP

Query:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        I+GSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

XP_022996700.1 F-box protein GID2-like [Cucurbita maxima]

2.4e-71

95.65

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Query:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP
        MKKIKSVS+EQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATA+GVSKQWYKTAHDEWLWELLCTKHWANIGCAN QLRSVVLALGGFRRLHSLYPFPP
Subjt:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP

Query:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        IIGSASCI WGK E+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

1.3e-72

97.12

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Query:  MKKIKSVSEEQQSPPP-SSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFP
        MKKIKSVS+EQQSPPP SSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFP
Subjt:  MKKIKSVSEEQQSPPP-SSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFP

Query:  PIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        P+IGSASCIPWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

1.1e-58

82.14

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Query:  MKKIKSVSEEQQ--SPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KSVS +Q+     P  S FANLDDNLLFEVFKHVDARTLAT AGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF
Subjt:  MKKIKSVSEEQQ--SPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF

Query:  PPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        PP+IG     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

A0A1S3BDV6 F-box protein GID2-like

6.7e-59

81.56

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Query:  MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYP
        +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYP
Subjt:  MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYP

Query:  FPPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        FPP+IG     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  FPPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

A0A5A7V5E1 F-box protein GID2-like

6.7e-59

81.56

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Query:  MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYP
        +KK KS S +Q+ P    P  S FANLDDNLLFEVFKHVDARTLATAAGV+KQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYP
Subjt:  MKKIKSVSEEQQSP---PPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYP

Query:  FPPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        FPP+IG     PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  FPPIIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1HCI1 F-box protein GID2-like

9.6e-74

98.55

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Query:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP
        MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP
Subjt:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP

Query:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        I+GSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1K7I7 F-box protein GID2-like

1.2e-71

95.65

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Query:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP
        MKKIKSVS+EQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATA+GVSKQWYKTAHDEWLWELLCTKHWANIGCAN QLRSVVLALGGFRRLHSLYPFPP
Subjt:  MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPP

Query:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS
        IIGSASCI WGK E+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  IIGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRPTS

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.3e-22

40.29

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Query:  EEQQSPPPSSSA------FANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPII
        ++Q+  PP  +         +L ++L+FEV +  +ARTLA AA VS+ W + A DE LWE  C + WAN+G + +QLR+VVL+LGGFRRLH++Y   P+ 
Subjt:  EEQQSPPPSSSA------FANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPII

Query:  GSASCIP-----------WGKDELHLSLSLLSIRYYEKM
           + +P            G+D++ LSLSL SI +++ M
Subjt:  GSASCIP-----------WGKDELHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

2.9e-11

35.58

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Query:  NLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSLLSIRY
        ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L    P++     + W +D+L LSLSL  + Y
Subjt:  NLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSLLSIRY

Query:  YEKM
        YE++
Subjt:  YEKM

Q9STX3 F-box protein GID2

6.7e-40

62.22

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Query:  KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPI
        KK+KS  EE+         F+NLD+NL++EV KHVDA+TLA ++ VSK W+KTA DE LWEL+CT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+
Subjt:  KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPI

Query:  IGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRP
                +GKDEL L+LSLLSIRYYEKM F  RP
Subjt:  IGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRP

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

4.7e-41

62.22

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Query:  KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPI
        KK+KS  EE+         F+NLD+NL++EV KHVDA+TLA ++ VSK W+KTA DE LWEL+CT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+
Subjt:  KKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPI

Query:  IGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRP
                +GKDEL L+LSLLSIRYYEKM F  RP
Subjt:  IGSASCIPWGKDELHLSLSLLSIRYYEKMKFKNRP

AT5G39250.1 F-box family protein

4.6e-04

34.04

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Query:  DNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANI
        + +L  VF  ++   LA+  GV KQW   A D++ W+  C K W ++
Subjt:  DNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANI

AT5G48170.1 F-box family protein

2.1e-12

35.58

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Query:  NLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSLLSIRY
        ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L    P++     + W +D+L LSLSL  + Y
Subjt:  NLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPWGKDELHLSLSLLSIRY

Query:  YEKM
        YE++
Subjt:  YEKM

Sequences

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CDS sequence

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ATGAAGAAAATCAAATCAGTTTCAGAGGAACAACAATCCCCACCACCCTCCTCCTCTGCTTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTTGA
CGCAAGGACACTCGCCACGGCCGCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGATGAGTGGCTCTGGGAGTTGCTCTGCACCAAACACTGGGCTAACATCGGCT
GTGCTAACCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTCCCCCTATCATAGGATCCGCATCCTGTATTCCCTGG
GGCAAAGACGAGCTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

mRNA sequence

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Protein sequence

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MKKIKSVSEEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATAAGVSKQWYKTAHDEWLWELLCTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFPPIIGSASCIPW
GKDELHLSLSLLSIRYYEKMKFKNRPTS

Carg11866 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome