; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg12025 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12025
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L18
Genome locationCarg_Chr05:9241237..9243114
RNA-Seq ExpressionCarg12025
SyntenyCarg12025
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000039 - Ribosomal protein L18e
IPR021131 - Ribosomal protein L18e/L15P
IPR036227 - Ribosomal L18e/L15P superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586240.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia]2.0e-6597.83Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAV+VGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTETARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

KAG7030142.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. argyrosperma]9.5e-92100Show/hide
Query:  MPSASIKRAFKNPRAIFLPQRSPSPSQKGRGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFM
        MPSASIKRAFKNPRAIFLPQRSPSPSQKGRGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFM
Subjt:  MPSASIKRAFKNPRAIFLPQRSPSPSQKGRGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFM

Query:  KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQPHLLSLSHSKYIL
        KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQPHLLSLSHSKYIL
Subjt:  KGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQPHLLSLSHSKYIL

XP_022965965.1 60S ribosomal protein L18-3 [Cucurbita maxima]1.5e-6598.55Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTETARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

XP_022999399.1 60S ribosomal protein L18-2 [Cucurbita maxima]3.4e-6597.83Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFN+VILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTETARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

XP_023537655.1 60S ribosomal protein L18-2 [Cucurbita pepo subsp. pepo]2.6e-6597.1Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRL+KFMKGKEDKIAV+VGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTETARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

TrEMBL top hitse value%identityAlignment
A0A6J1DTG6 60S ribosomal protein L18-31.4e-6496.38Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        L+FTETARARIEKAGGECLTFDQLAL+APLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

A0A6J1FC57 60S ribosomal protein L18-3-like1.1e-6497.1Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTETARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

A0A6J1G525 60S ribosomal protein L18-33.7e-6597.83Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKF KGKEDKIAVIVGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTETARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

A0A6J1HQ85 60S ribosomal protein L18-37.4e-6698.55Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTETARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

A0A6J1KGZ8 60S ribosomal protein L18-21.6e-6597.83Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFN+VILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTETARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

SwissProt top hitse value%identityAlignment
O22254 Putative 60S ribosomal protein L18-11.5e-5277.7Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVRLQ
        LRFTE+ARARI KAGGECLTFDQLAL  P   +NTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVRLQ

O65729 60S ribosomal protein L18 (Fragment)3.3e-5585.16Show/hide
Query:  DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALR
        DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PP+SLSRLIK+M+GKE KI V+VG VTDDIRVY+VP +KVTAL+
Subjt:  DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALR

Query:  FTETARARIEKAGGECLTFDQLALRAPL
        FTETARARI+KAGGECLTFDQLALR PL
Subjt:  FTETARARIEKAGGECLTFDQLALRAPL

P42791 60S ribosomal protein L18-24.0e-6185.51Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK P+SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTE ARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

Q4GXG7 60S ribosomal protein L181.0e-4065.38Show/hide
Query:  KKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETAR
        +K +RT PKS D+YL+LLVKLYR+L RRTG+ FN +ILKRLFMSK+ +PPISLS++++FMK  G+E   AVIVGTVTDD R++E+P L + ALR T+TAR
Subjt:  KKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMK--GKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETAR

Query:  ARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        A I KAGGE +TFDQLALR+P G  TV LQ
Subjt:  ARIEKAGGECLTFDQLALRAPLGQNTVRLQ

Q940B0 60S ribosomal protein L18-34.8e-6286.23Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK P+SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTE ARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

Arabidopsis top hitse value%identityAlignment
AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein1.2e-2873.56Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVRLQ
        MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTV L+
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVRLQ

AT2G47570.2 Ribosomal protein L18e/L15 superfamily protein1.2e-2873.56Show/hide
Query:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVRLQ
        MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTV L+
Subjt:  MSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVRLQ

AT3G05590.1 ribosomal protein L182.9e-6285.51Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK P+SLSRL++FM GKEDKIAV+VGT+TDD+RV+E+PA+KVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTE ARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ

AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein3.4e-6386.23Show/hide
Query:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA
        GIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK P+SLSRL++FM GK+DKIAV+VGT+TDD+RV+E+PA+KVTA
Subjt:  GIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTA

Query:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ
        LRFTE ARARIEKAGGECLTFDQLALRAPLGQNTV L+
Subjt:  LRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCGGCTTCCATAAAAAGGGCCTTCAAAAACCCTAGAGCCATTTTCCTCCCTCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGGGATAGATCTTGTAGCAGG
AGGTAAGAGCAAGAAGACCAAGAGGACTGCCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCAATTTCA
ATGCAGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGATAAAATTGCCGTCATT
GTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTGACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGA
GTGCTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTCGGTCAGAATACGGTACGATTACAACCCCATTTACTTTCTCTATCACACTCAAAATACATCCTC
mRNA sequenceShow/hide mRNA sequence
ATGCCCTCGGCTTCCATAAAAAGGGCCTTCAAAAACCCTAGAGCCATTTTCCTCCCTCAGAGGTCGCCGTCGCCGTCGCAGAAGGGAAGGGGGATAGATCTTGTAGCAGG
AGGTAAGAGCAAGAAGACCAAGAGGACTGCCCCTAAGTCCGATGATATCTACCTCAAGCTTCTTGTTAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCAATTTCA
ATGCAGTGATCCTGAAGCGCTTGTTCATGAGCAAGGTGAACAAGCCACCAATTTCTCTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAGATAAAATTGCCGTCATT
GTGGGAACTGTGACCGACGACATTCGCGTTTATGAAGTTCCAGCTTTGAAAGTGACAGCCTTGAGGTTTACTGAGACCGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGA
GTGCTTGACATTCGACCAGCTTGCCCTGAGGGCTCCTCTCGGTCAGAATACGGTACGATTACAACCCCATTTACTTTCTCTATCACACTCAAAATACATCCTC
Protein sequenceShow/hide protein sequence
MPSASIKRAFKNPRAIFLPQRSPSPSQKGRGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKEDKIAVI
VGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVRLQPHLLSLSHSKYIL