CuGenDBv2

Gene ID	Carg12050
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Translation elongation factor EF1B/ribosomal protein S6 family protein
Genome location	Carg_Chr05:9473566..9476455
RNA-Seq Expression	Carg12050
Synteny	Carg12050
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003746 - translation elongation factor activity (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

4.3e-77

100

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE
        YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

3.4e-66

88.89

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDDN DEEYDVEQEE   E
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

8.9e-75

97.39

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE
        YGLEFLSEDDGK ELNKFPRF MIGDDDADEEDDDDD+DDEEYDVEQEERTTE
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE

XP_023005590.1 uncharacterized protein LOC111498530 [Cucurbita maxima]

1.2e-68

92.62

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEE
        YGLEFLSEDDGK ELNKFPRF+MIGDDDADEEDDDDD+DD E + E+ E
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

6.2e-76

98.69

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE
        YGLEFLSEDDGK ELNKFPRFNMIGDDDADEEDDDDD+DDEEYDVEQEERTTE
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FW87 Uncharacterized protein

8.7e-60

80.67

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLL+KPHV+KEAL+DLVAR+GKHV+RRNGV+TD+KSFG VQLGYGIKKLDGRY+QGQLMQMTMMATPN+N+ELHYLN EDRLLRWLLVKHR+ K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEER
        YGLEFL+EDDGK EL+KF R ++  D+D DE+DDDD  DDEEYDV+QEER
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEER

A0A6J1CN79 uncharacterized protein LOC111013137

1.6e-66

88.89

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE
        YGLEFLSEDD K EL+KFPR  ++GDDD DEEDDDDDN DEEYDVEQEE   E
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE

A0A6J1FEF6 uncharacterized protein LOC111443208

4.3e-75

97.39

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE
        YGLEFLSEDDGK ELNKFPRF MIGDDDADEEDDDDD+DDEEYDVEQEERTTE
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE

A0A6J1KXT7 uncharacterized protein LOC111498530

6.0e-69

92.62

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEE
        YGLEFLSEDDGK ELNKFPRF+MIGDDDADEEDDDDD+DD E + E+ E
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEE

A0A7N2L1D1 Uncharacterized protein

6.0e-61

81.33

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLL+KPHV+KEAL++LVAR+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGRY+QGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEER
        YGLEFLSEDDGK EL+KF R ++  DDD DE+DDDD  DD+EYDV+QEE+
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

3.9e-44

64.44

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLL KP +RKE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR++QGQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDD
         G     ++D     N+    ++     +DE+D++
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.7e-39

60.74

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLL KP +RKE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR++     Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDD
         G     ++D     N+    ++     +DE+D++
Subjt:  YGLEFLSEDDGKKELNKFPRFNMIGDDDADEEDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGT
CACTGACATTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGA
ACATGAACAAGGAGTTACATTACCTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACGCAAAATATGGCCTGGAATTCCTTAGCGAAGACGAT
GGAAAGAAAGAACTTAACAAATTTCCTCGATTTAACATGATTGGTGATGACGACGCAGATGAAGAAGATGACGATGACGACAATGATGACGAAGAATACGACGTGGAGCA
AGAAGAGAGGACAACAGAGTGA

mRNA sequence

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TTTTGCCCTCGCCTTCTCTTCCCATTTTTCGAAAGCATCGCCTAAAATCCGCAGCGGCGTCGGCGCCGACCGTCATTTCTCTCGGCAATCGGCTAAAATCTGTAACAGTT
CGAAAGAGGAGATTTGGTGCTATCAATCAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGG
GCAAGCATGTGTTCAGAAGAAATGGGGTTGTCACTGACATTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGGGCAA
CTTATGCAGATGACGATGATGGCCACTCCGAACATGAACAAGGAGTTACATTACCTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACGCAAA
ATATGGCCTGGAATTCCTTAGCGAAGACGATGGAAAGAAAGAACTTAACAAATTTCCTCGATTTAACATGATTGGTGATGACGACGCAGATGAAGAAGATGACGATGACG
ACAATGATGACGAAGAATACGACGTGGAGCAAGAAGAGAGGACAACAGAGTGAATTTTGGTTGTGTCTATTATGATAGCCCAAGTATGAACTTAGTGAAGGGACCTCTGG
TACCGTTCTTGTGATATTGTAGGCAGACAAATAAAGAGATGGGTGGTTTCTTTAGTTTGTCCATATCATCTGATTCTCTGAAACAAAGATCCATAAATGCCTTTTGCCTG
TTTGTGGGATGTTTTTCTTGAGATGTCGGGTCTTGGGTTCGAGCCTCTACATGAGAAGTTTATGTAATGAATATCTCATCATCTTTTAAAACTTTGCTTTTGGTTGAAGT
TGTATGTCTTAACCCGTTGAGTTATAAAGCTATCCGTGGTGTGTAATATTGTTGTATTCCGTTGTGTGTGCTCGAAGTAGAAGTTTCGTATAAATAAGTTCCTTTCTTTT
T

Protein sequence

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MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDD
GKKELNKFPRFNMIGDDDADEEDDDDDNDDEEYDVEQEERTTE

Carg12050 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome