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Carg12053 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12053
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase RNF34
Genome locationCarg_Chr05:9479848..9482490
RNA-Seq ExpressionCarg12053
SyntenyCarg12053
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0016020 - membrane (cellular component)
GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domainsIPR027921 - NOP protein chaperone 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596894.1 hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sororia]3.2e-6883.85Show/hide
Query:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSSL                               VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEK
        LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEK

KAG7030170.1 hypothetical protein SDJN02_08517 [Cucurbita argyrosperma subsp. argyrosperma]6.1e-80100Show/hide
Query:  MRHASKDLLCLERKDLPSSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCS
        MRHASKDLLCLERKDLPSSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCS
Subjt:  MRHASKDLLCLERKDLPSSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCS

Query:  SSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPKILELS
        SSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPKILELS
Subjt:  SSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPKILELS

XP_022936657.1 uncharacterized protein LOC111443185 isoform X1 [Cucurbita moschata]3.0e-7181.46Show/hide
Query:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSS                                VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGNQPVI LNCSSSSS ESESEESSDDSITSDNND+DNEKSDNQN+DRGNRLSVKLKR KSR+TNCRSESKEKGKSNKRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPK

Query:  ILELS
        ILELS
Subjt:  ILELS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]4.0e-7182.04Show/hide
Query:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSSL                               VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNG+ESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLNC-SSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRP
        LGIADLHTPEAVAAAESAIIGNQPVIPLNC SSSSSSESESEESSDDSITSDNNDNDNEKSD QN+DRGNRLSVKLKRSKSRR NCRSES+EKGKSNKRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLNC-SSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRP

Query:  KILELS
        KILELS
Subjt:  KILELS

XP_023539679.1 uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo]3.7e-6980.58Show/hide
Query:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSSL                               VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCS-SSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRP
        LGIADLHTPEAVAAAESAIIGNQPVIPLNCS SSSSSESESEE+SDDSITSDNND+DNEKSDN+N+DRGNRLSVKLKRSKSR+TN RSESKEKGKS KRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCS-SSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRP

Query:  KILELS
        +ILELS
Subjt:  KILELS

TrEMBL top hitse value%identityAlignment
A0A0A0L448 Uncharacterized protein4.9e-5179.62Show/hide
Query:  SSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSI
        S SLVLGRVKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+G+ESEVI+LDLMLGIADLHTPEAV AAESAIIGN PVIPL C   SSSESESEESSDDSI
Subjt:  SSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSI

Query:  TSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPKILELS
        TSD++++DNEKSD+Q +D  NRLSVKLKRS SR+T+CRS+SK KGKS KRPKI  LS
Subjt:  TSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPKILELS

A0A1S3BJW4 uncharacterized protein LOC1034908387.4e-5568.29Show/hide
Query:  MRHASKDLLCLERKDLPSS-------------------------------SLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLL LERKDL +S                               SLVLGRV+DFLGV+SEANKKLQ+D+K++A+KYDIEAL+G+ESEVI+LDLM
Subjt:  MRHASKDLLCLERKDLPSS-------------------------------SLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGN PVIPL C   SSSESESEESSDDSITSD+++NDNEKSD+QN+D  NRLSVKLKRS SR+ +CRS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPK

Query:  ILELS
        I  LS
Subjt:  ILELS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF347.4e-5568.29Show/hide
Query:  MRHASKDLLCLERKDLPSS-------------------------------SLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLL LERKDL +S                               SLVLGRV+DFLGV+SEANKKLQ+D+K++A+KYDIEAL+G+ESEVI+LDLM
Subjt:  MRHASKDLLCLERKDLPSS-------------------------------SLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGN PVIPL C   SSSESESEESSDDSITSD+++NDNEKSD+QN+D  NRLSVKLKRS SR+ +CRS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPK

Query:  ILELS
        I  LS
Subjt:  ILELS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X11.5e-7181.46Show/hide
Query:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSS                                VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGNQPVI LNCSSSSS ESESEESSDDSITSDNND+DNEKSDNQN+DRGNRLSVKLKR KSR+TNCRSESKEKGKSNKRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPK

Query:  ILELS
        ILELS
Subjt:  ILELS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X11.9e-7182.04Show/hide
Query:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSSL                               VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNG+ESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSL-------------------------------VLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIPLNC-SSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRP
        LGIADLHTPEAVAAAESAIIGNQPVIPLNC SSSSSSESESEESSDDSITSDNNDNDNEKSD QN+DRGNRLSVKLKRSKSRR NCRSES+EKGKSNKRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIPLNC-SSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRP

Query:  KILELS
        KILELS
Subjt:  KILELS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71430.1 unknown protein5.4e-1858Show/hide
Query:  LPSSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCSSS---SSSESESEES
        +P S L LG++K FLGV++EANKK    ++ + E Y+IEAL G+ESE+IE+DLMLG+ADL+TPEAV+AAE+AI G  P      SSS   S SESE EES
Subjt:  LPSSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCSSS---SSSESESEES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCATGCTAGCAAGGATCTTTTGTGTTTGGAGCGGAAAGATTTGCCCTCTTCGTCTTTAGTATTGGGAAGAGTCAAAGACTTCTTAGGAGTATTATCAGAAGCTAA
TAAAAAGCTGCAATTGGATGCAAAGGACGATGCTGAAAAATATGATATTGAAGCCCTTAATGGCGATGAATCAGAAGTCATTGAATTGGATCTGATGTTGGGCATTGCTG
ATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTGATTCCATTGAATTGTAGTAGTAGTAGTAGTAGTGAATCAGAGTCTGAA
GAGAGTAGTGATGATAGCATTACAAGTGACAACAATGACAATGACAATGAAAAGAGTGACAATCAGAATAGTGACCGTGGGAATCGATTGTCAGTTAAACTCAAAAGATC
GAAGTCTAGAAGAACCAATTGTAGAAGTGAAAGCAAAGAAAAAGGTAAATCAAATAAGCGACCAAAGATTCTAGAGCTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
CAAACCAATTTCTCGGGTCTACTTAAGCCTATCGCCGGTCGGCATAGCAGTTTATCGGCGACGCCTCCTCAGTTTTCCTCACAGTCGCCGGGAAGAGCTGCCAGCCGCCG
CTAGTGGTCGCTGTCCGCCCTTTGCTGTTTGCTCTGTAGCTATCTCTTTCTTGCACAAAACGCAGATAGAAGACGCGAAAGATGCGGCATGCTAGCAAGGATCTTTTGTG
TTTGGAGCGGAAAGATTTGCCCTCTTCGTCTTTAGTATTGGGAAGAGTCAAAGACTTCTTAGGAGTATTATCAGAAGCTAATAAAAAGCTGCAATTGGATGCAAAGGACG
ATGCTGAAAAATATGATATTGAAGCCCTTAATGGCGATGAATCAGAAGTCATTGAATTGGATCTGATGTTGGGCATTGCTGATCTTCATACTCCTGAAGCTGTGGCTGCT
GCTGAATCTGCAATAATTGGTAATCAGCCTGTGATTCCATTGAATTGTAGTAGTAGTAGTAGTAGTGAATCAGAGTCTGAAGAGAGTAGTGATGATAGCATTACAAGTGA
CAACAATGACAATGACAATGAAAAGAGTGACAATCAGAATAGTGACCGTGGGAATCGATTGTCAGTTAAACTCAAAAGATCGAAGTCTAGAAGAACCAATTGTAGAAGTG
AAAGCAAAGAAAAAGGTAAATCAAATAAGCGACCAAAGATTCTAGAGCTTTCTTAAGAGCCATCTTTTGATCGCATCTGATTCGATAATATGGATGTGTCGCTATGTTTG
AAAGTATATGAAGTTTCTGATGCTTGCACTGACAAAATCTTGAATGTTGATTTGCCTGCCTAGTCCTTTAAGCTTTTGGGTAGGAAGCGATTTTGCTCAAGCTATTTCTT
TCTTCATTTAGTTCATGTGCTTTCTTGGAAGGGAAGGCGCTGTCTTTATGCATTTCTCTTATAGGAACTGGAATTGGAATATAGTTAAGTTGGGAATTATTCTTGATCAG
ATTACCAATGTTGGTTTGTATACATGATGTCGAACTTCAATACTTCAGAAATAGCCAAATTAAGATATTTTTTGTTCTATTTGGCCCCTCTTCTTTCTTTCACCAGTTCT
TATATGTTGTTATGCTTTCTAAGGAGAAATTCACTGGTTTTTGCTAGAGATTATGCATAGGATTCTTCTTATT
Protein sequenceShow/hide protein sequence
MRHASKDLLCLERKDLPSSSLVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLNCSSSSSSESESE
ESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKSRRTNCRSESKEKGKSNKRPKILELS