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Carg12060 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12060
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnovel plant SNARE 11-like
Genome locationCarg_Chr05:9559428..9560039
RNA-Seq ExpressionCarg12060
SyntenyCarg12060
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596901.1 putative plant SNARE 11, partial [Cucurbita argyrosperma subsp. sororia]5.8e-0583.87Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
        + + +LVNPNNKDIQDIPGLAPPVQTQSRRL
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
KAG7030177.1 hypothetical protein SDJN02_08524, partial [Cucurbita argyrosperma subsp. argyrosperma]5.6e-32100Show/hide
Query:  MSIAEQLWLCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKMLPIFSSSIITSLEAWPRMGNDDRVMGANG
        MSIAEQLWLCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKMLPIFSSSIITSLEAWPRMGNDDRVMGANG
Subjt:  MSIAEQLWLCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKMLPIFSSSIITSLEAWPRMGNDDRVMGANG
XP_022935580.1 novel plant SNARE 11-like [Cucurbita moschata]5.8e-0583.87Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
        + + +LVNPNNKDIQDIPGLAPPVQTQSRRL
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
XP_023005509.1 novel plant SNARE 11-like [Cucurbita maxima]1.7e-0480.65Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
        + + +LVNPNNKDIQDIPGLAPPVQ+QSRRL
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
XP_023539777.1 novel plant SNARE 11-like [Cucurbita pepo subsp. pepo]5.8e-0583.87Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
        + + +LVNPNNKDIQDIPGLAPPVQTQSRRL
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
TrEMBL top hitse value%identityAlignment
A0A6J1FB13 novel plant SNARE 11-like2.8e-0583.87Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
        + + +LVNPNNKDIQDIPGLAPPVQTQSRRL
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
A0A6J1KZD8 novel plant SNARE 11-like8.2e-0580.65Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
        + + +LVNPNNKDIQDIPGLAPPVQ+QSRRL
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRL
SwissProt top hitse value%identityAlignment
Q9LRP1 Novel plant SNARE 138.7e-0461.76Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKML
        + + ++VNPNNKDI+DIPGLAPP   QSR+L  L
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKML
Arabidopsis top hitse value%identityAlignment
AT1G48240.1 novel plant snare 128.1e-0562.96Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQ
        + + ++VNPNNKDI+DIPGLAPP Q++
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQ
AT3G17440.1 novel plant snare 136.2e-0561.76Show/hide
Query:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKML
        + + ++VNPNNKDI+DIPGLAPP   QSR+L  L
Subjt:  LCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKML

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATAGCTGAACAACTCTGGCTCTGTCTCCCTCAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCAGGGCTGGCACCGCCGGTCCAGACTCAGAGTCG
GAGACTTAAGATGCTCCCCATTTTTTCGAGTTCAATTATTACAAGTCTTGAAGCGTGGCCTAGAATGGGGAATGATGATCGTGTTATGGGTGCGAACGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTATAGCTGAACAACTCTGGCTCTGTCTCCCTCAGCTGGTGAATCCAAATAACAAGGACATTCAGGACATCCCAGGGCTGGCACCGCCGGTCCAGACTCAGAGTCG
GAGACTTAAGATGCTCCCCATTTTTTCGAGTTCAATTATTACAAGTCTTGAAGCGTGGCCTAGAATGGGGAATGATGATCGTGTTATGGGTGCGAACGGGTAA
Protein sequenceShow/hide protein sequence
MSIAEQLWLCLPQLVNPNNKDIQDIPGLAPPVQTQSRRLKMLPIFSSSIITSLEAWPRMGNDDRVMGANG