; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg12117 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12117
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Genome locationCarg_Chr11:2300282..2302949
RNA-Seq ExpressionCarg12117
SyntenyCarg12117
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
InterPro domainsIPR029071 - Ubiquitin-like domain superfamily
IPR039690 - U11/U12 small nuclear ribonucleoprotein 25kDa protein
IPR040610 - SNRNP25, ubiquitin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021772.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-69100Show/hide
Query:  MGPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYK
        MGPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYK
Subjt:  MGPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYK

Query:  HYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        HYKLIDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  HYKLIDEKSRIKRFGIRDGDLLHFVNRVA

XP_022927502.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]6.4e-66100Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL

Query:  IDEKSRIKRFGIRDGDLLHFVNRVA
        IDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  IDEKSRIKRFGIRDGDLLHFVNRVA

XP_022973901.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]4.1e-6598.4Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGM MNREDVKISWPHVWSHFCLCYKHYKL
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL

Query:  IDEKSRIKRFGIRDGDLLHFVNRVA
        IDEKSRIKRFGIRDGDLLHFVNR+A
Subjt:  IDEKSRIKRFGIRDGDLLHFVNRVA

XP_023531556.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo]2.6e-6799.22Show/hide
Query:  GPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKH
        GPFM RIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKH
Subjt:  GPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKH

Query:  YKLIDEKSRIKRFGIRDGDLLHFVNRVA
        YKLIDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  YKLIDEKSRIKRFGIRDGDLLHFVNRVA

XP_023531557.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo]5.4e-6599.2Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
        M RIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL

Query:  IDEKSRIKRFGIRDGDLLHFVNRVA
        IDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  IDEKSRIKRFGIRDGDLLHFVNRVA

TrEMBL top hitse value%identityAlignment
A0A0A0LT94 Ubiquitin_4 domain-containing protein2.0e-4978.51Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
        M  IEP +PDSCCISPRF SNSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+KL
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL

Query:  IDEKSRIKRFGIRDGDLLHFV
        +D+KSRI+ FGIRDGD LHFV
Subjt:  IDEKSRIKRFGIRDGDLLHFV

A0A1S3BA12 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X26.9e-5077.87Show/hide
Query:  FMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYK
        FM +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+K
Subjt:  FMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYK

Query:  LIDEKSRIKRFGIRDGDLLHFV
        L+D+KSRI+ FGIRDGD LHFV
Subjt:  LIDEKSRIKRFGIRDGDLLHFV

A0A5A7U4H4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X26.9e-5077.87Show/hide
Query:  FMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYK
        FM +IEP +PDSCCISPRF +NSFRRSLRY RLP +LL LSVLKLDGSSFEVQV R A+VA +R+AVESVFC MSMN+ED  ISWPHVW HFCLCYKH+K
Subjt:  FMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYK

Query:  LIDEKSRIKRFGIRDGDLLHFV
        L+D+KSRI+ FGIRDGD LHFV
Subjt:  LIDEKSRIKRFGIRDGDLLHFV

A0A6J1EHC7 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like3.1e-66100Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL

Query:  IDEKSRIKRFGIRDGDLLHFVNRVA
        IDEKSRIKRFGIRDGDLLHFVNRVA
Subjt:  IDEKSRIKRFGIRDGDLLHFVNRVA

A0A6J1I9W9 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like2.0e-6598.4Show/hide
Query:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL
        MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGM MNREDVKISWPHVWSHFCLCYKHYKL
Subjt:  MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKL

Query:  IDEKSRIKRFGIRDGDLLHFVNRVA
        IDEKSRIKRFGIRDGDLLHFVNR+A
Subjt:  IDEKSRIKRFGIRDGDLLHFVNRVA

SwissProt top hitse value%identityAlignment
Q3ZBQ4 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.1e-0429.07Show/hide
Query:  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRV
        V K+DG    V V + A+V  L++A++  +  +   RE     ISW +VW  + L     KL +++ +++ +GIR+ D + F+ ++
Subjt:  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRV

Q84WS8 U11/U12 small nuclear ribonucleoprotein 25 kDa protein1.3e-0837.21Show/hide
Query:  LHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV
        + LSV+KLDGSS +V V   A++  L+  ++     M   N     ISW HVWS+FCL   + KL+D+ + ++  GIR+   + F+
Subjt:  LHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV

Q8VIK1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein8.5e-0529.07Show/hide
Query:  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRV
        V K+DG    V V + A+V  L++A++  +  +   RE     ISW +VW  + L     KL +++ +++ +GIR+ D + F+ ++
Subjt:  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRV

Q9BV90 U11/U12 small nuclear ribonucleoprotein 25 kDa protein8.5e-0529.07Show/hide
Query:  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRV
        V K+DG    V V + A+V  L++A++  +  +   RE     ISW +VW  + L     KL +++ +++ +GIR+ D + F+ ++
Subjt:  VLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNRED--VKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRV

Arabidopsis top hitse value%identityAlignment
AT1G80060.1 Ubiquitin-like superfamily protein1.7e-2143.8Show/hide
Query:  ISPRFRSN---------SFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEK
        I PRF S+         S RRS   +  P   + LSV+KL+GS F+V+VA+  SVA+L+ AVE VF    +    + ISW HVW HFCLCY+  +L+++K
Subjt:  ISPRFRSN---------SFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEK

Query:  SRIKRFGIRDGDLLHFVNRVA
        + I+  G+ DGD LHFV  ++
Subjt:  SRIKRFGIRDGDLLHFVNRVA

AT3G07860.1 Ubiquitin-like superfamily protein9.0e-1037.21Show/hide
Query:  LHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV
        + LSV+KLDGSS +V V   A++  L+  ++     M   N     ISW HVWS+FCL   + KL+D+ + ++  GIR+   + F+
Subjt:  LHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSM-NREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFV

AT4G32270.1 Ubiquitin-like superfamily protein7.9e-2246.08Show/hide
Query:  RRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNR
        RRS  Y ++P   + L+VLKLDGSSF +QV + A+V +L+ AVE+ F  + ++    KISWPHVW  FCL Y+  +LI+E   +  FGI+DGD L F+  
Subjt:  RRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNR

Query:  VA
        ++
Subjt:  VA

AT4G32270.2 Ubiquitin-like superfamily protein4.5e-1744.68Show/hide
Query:  LPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA
        +P   + L+VLKLDGSSF   V + A+V +L+ AVE+ F  + ++    KISWPHVW  FCL Y+  +LI+E   +  FGI+DGD L F+  ++
Subjt:  LPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNRVA

AT5G25340.1 Ubiquitin-like superfamily protein1.9e-2046.08Show/hide
Query:  RRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNR
        RR+  Y +LP+  + LSVLKLDGSSF+V V   A+V  L+ A+E+ F  +   +   KISW HVW HFCLC+   KLI +   I  +G++DGD + F N 
Subjt:  RRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHFVNR

Query:  VA
        V+
Subjt:  VA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCATTCATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCC
ATCGCGGCTCCTCCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTT
TCTGTGGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGT
ATCAAACGCTTTGGAATCAGGGATGGTGATCTGCTGCATTTTGTGAACCGTGTAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCCATTCATGCCTCGCATTGAACCGAATATTCCGGATTCATGTTGTATCTCGCCTCGGTTTCGGAGCAACAGTTTTCGTCGGAGTCTTCGCTACCAGAGGCTTCC
ATCGCGGCTCCTCCACCTCTCCGTCTTGAAATTGGACGGTTCTTCCTTCGAGGTGCAAGTTGCGAGGAAAGCGTCTGTGGCAAAGCTTAGAGAGGCGGTGGAGAGTGTTT
TCTGTGGAATGTCGATGAATAGAGAAGATGTCAAGATTTCATGGCCACATGTGTGGAGTCATTTTTGCTTATGCTATAAACATTACAAGCTGATCGACGAGAAATCGCGT
ATCAAACGCTTTGGAATCAGGGATGGTGATCTGCTGCATTTTGTGAACCGTGTAGCTTAATTTTCGCCAAGAATCAGTGGATTTGGGATGGCCCAAAAGAATGAATGGAT
AGAGTAATATAGGCAGGCTGGTTGAACGGCTTCTGGTATAAACTTGTCGGAAGTTTTTGGGTGTGAATTATTGTGAAGTGGAGAATCTGAGAGGATGAATGCTATTATTG
CCCGATCAACTTGATGTTATGGGGAGTGCAAGCTCTACAGTGTGTGAAGCTATGAACTCTGAAGATTTTCAGCTGAGATTATATGTTTCTGTGGCCTTAATTTATGCACT
TAGAAAATTATTCTGTCTTGTAAGTTGAGACTTGGAAAGAATTCATAAATTTTAATGCTTTGATAGTTTCTTTATTAAACGAATAGTTGCCTAGAAACTTTAGGCGTTTA
AACATGAATCAGAATGAGCATCAATGACCACCTACTACTTCTTCTCCTTTCCTGTTAAAGATCATGGTTTAGGTTATTA
Protein sequenceShow/hide protein sequence
MGPFMPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVAKLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSR
IKRFGIRDGDLLHFVNRVA