CuGenDBv2

Gene ID	Carg12128
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein
Genome location	Carg_Chr11:2366496..2367893
RNA-Seq Expression	Carg12128
Synteny	Carg12128
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021783.1 rpmJ [Cucurbita argyrosperma subsp. argyrosperma]

4.2e-49

100

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

XP_022933442.1 uncharacterized protein LOC111440855 [Cucurbita moschata]

2.1e-48

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEI PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

XP_022971996.1 uncharacterized protein LOC111470644 [Cucurbita maxima]

3.0e-47

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

XP_022987917.1 uncharacterized protein LOC111485318 [Cucurbita maxima]

5.0e-42

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQEI PSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

1.2e-43

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE P PSLFSRSEVKQE+ PSHSSRTGLASLIPQKHEPTML GWRMGLASIL KK+N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CT08 Ribosomal protein

3.1e-42

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVR+SVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLSTFASE PSP LFSRSEVKQEI PS+S RTGLASLIPQKHEPT +FGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

A0A6J1EZS5 Ribosomal protein

1.0e-48

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEI PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

A0A6J1HBF8 Ribosomal protein

1.6e-41

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQEI PSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

A0A6J1I4R0 Ribosomal protein

1.5e-47

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTVRRRGRVYIYCS+NPKHKQRQGLSTFASEAPSPSLFSRSEVK++I PSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

A0A6J1JBN8 Ribosomal protein

2.4e-42

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN
        MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQEI PSHSSRTGLASL+PQKHEPTMLFGWRMGLASIL KK N
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

8.9e-10

76.32

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVR SVKKMCE C+ V+R GRV + CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

B3WAJ5 50S ribosomal protein L36

1.4e-10

81.58

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

P73300 50S ribosomal protein L36

4.7e-11

81.58

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVRASVKKMC+ CR +RRRGRV + CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

Q035A6 50S ribosomal protein L36

1.4e-10

81.58

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVR SVKKMCE C+ VRR+GRV I CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

Q88XW3 50S ribosomal protein L36

8.9e-10

76.32

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MKVR SVK MCE C+ +RR+GRV I CSANPKHKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

1.7e-27

60.19

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQEI--FPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWK
        MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     QE+   P      GLASL+ ++  PT  FGWR GLASIL+K
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQEI--FPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWK

Query:  KQN
        + N
Subjt:  KQN

AT5G20180.2 Ribosomal protein L36

1.7e-27

60.19

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQEI--FPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWK
        MKVR+SVKKMCEFC+TV+RRGRVY+ CS+NPKHKQRQG S+FA E  +PS LF+     QE+   P      GLASL+ ++  PT  FGWR GLASIL+K
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPS-LFSRSEVKQEI--FPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWK

Query:  KQN
        + N
Subjt:  KQN

ATCG00760.1 ribosomal protein L36

3.5e-09

68.42

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Query:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG
        MK+RASV+K+CE CR +RRRGR+ + CS NP+HKQRQG
Subjt:  MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQG

Sequences

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CDS sequence

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ATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGTCGAGTATATATATACTGCTCTGCCAATCCCAAACACAAGCAACGCCA
AGGCCTGTCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAAGCAAGAGATTTTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTC
TCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTCTGTGGAAGAAACAAAATTAG

mRNA sequence

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TGTAGATCCATGATTCGGCCATTTTGTGCTTTCAGTGTATACTTTCTCTTTTCTTTAATTTCATTGTTGGAATTTGCAATAGTGAGATGTGATAGTTTTACATCGCATTT
GACTGCCGCTTTATGTCTTGGCTTCTTTTGTTTTCCTTCATACAGTCATGAAAGTCCGTGCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAGGCGTCGAGGT
CGAGTATATATATACTGCTCTGCCAATCCCAAACACAAGCAACGCCAAGGCCTGTCAACATTTGCAAGTGAAGCTCCATCTCCTTCCTTGTTCTCCAGAAGTGAGGTGAA
GCAAGAGATTTTTCCCAGTCATAGCTCGCGAACAGGGCTAGCCTCTCTCATCCCCCAAAAGCACGAGCCAACAATGTTGTTTGGTTGGAGAATGGGTCTGGCTTCAATTC
TGTGGAAGAAACAAAATTAGAGCTTAATCGACACAAGGACTGATTTTGTGTGCCATGGCAATGCTGCTGCTACATTGATAATTATTAGTTACTCTTTGAACTTCTTTCGT
GATAAAAGATGAAGCACTTCTGCTCTCAGATTTGTTCTATTTGAACTGGTTTTGATATTTAGAATGGGAGGAATAGATGGTGTTACTTACTTTGGATATCAAAATAACAT
TTAAACAACTTTCGACCTGCAAAGTTTGATGTTGTAAACGTCAAAGGCACAGGAAACGCTTAGCAAATCAAAGAAAATAAGACATCTAATGTAACTCTAAGACTGAAAAA
TAAAAGTCGAATTCCATTACGATTCAGGAACTTGTTCTAAATGTTGAATTTGAGTTCGGAATGTGTTTAAAATGAGATATAAATGAAGTTGGAAGCAGTAGAAGAAAAGA
AACGACTGTTTTTGCTGTTAATAATAGCAAGCAGTGGATGGATAGTGGGGGCCAGAGCCACACAAAAGGTGCGTATAAACCACCAACAAGAATCCACCAATTGAACTATC
C

Protein sequence

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MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQEIFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN

Carg12128 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome