; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg12147 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12147
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationCarg_Chr11:2462188..2462753
RNA-Seq ExpressionCarg12147
SyntenyCarg12147
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587916.1 hypothetical protein SDJN03_16481, partial [Cucurbita argyrosperma subsp. sororia]2.4e-7999.24Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFG
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFG
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFG

KAG7021801.1 hypothetical protein SDJN02_15529, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-81100Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV

XP_022931677.1 zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita moschata]1.2e-7898.48Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFG
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFG
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFG

XP_022931684.1 zinc finger Ran-binding domain-containing protein 2-like isoform X2 [Cucurbita moschata]4.8e-8098.52Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV

XP_023006411.1 zinc finger Ran-binding domain-containing protein 2-like isoform X1 [Cucurbita maxima]1.1e-7998.52Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYT NNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV

TrEMBL top hitse value%identityAlignment
A0A5D3E0T0 Zinc finger Ran-binding domain-containing protein 2-like isoform X31.8e-7285.71Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAY-----QYGSDATI
        MSWS+GDWICN CQNVNFKKREACHRC YPKYGGPDPSTY+YN TEALAGDWYCTT++CGAHNYASRPNCF+CGAFKS YP D  AY     QYGSDA+I
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAY-----QYGSDATI

Query:  PPGWKSGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
        PPGWKSGDWICPRMGCGVHNYASR ECFKCKTPRDFG AV
Subjt:  PPGWKSGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV

A0A6J1EUC5 zinc finger Ran-binding domain-containing protein 2-like isoform X15.7e-7998.48Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFG
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFG
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFG

A0A6J1EUY0 zinc finger Ran-binding domain-containing protein 2-like isoform X22.3e-8098.52Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTY NTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV

A0A6J1KXP9 zinc finger Ran-binding domain-containing protein 2-like isoform X15.1e-8098.52Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYT NNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV

A0A6J1L4V4 zinc finger Ran-binding domain-containing protein 2-like isoform X21.3e-7898.48Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK
        MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYT NNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSD AAYQYGSDATIPPGWK
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWK

Query:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFG
        SGDWICPRMGCGVHNYASRTECFKCKTPRDFG
Subjt:  SGDWICPRMGCGVHNYASRTECFKCKTPRDFG

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c1.9e-0728.67Show/hide
Query:  GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDW-YCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDA-----------
        GDW C  C   NF++R +C RC++P  G    S  T +NT   + D+ Y  +   G+ ++ +        + ++   SD   +Q G++A           
Subjt:  GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDW-YCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDA-----------

Query:  -TIPPGWKSGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV
          +P  +++GDW C   GCG HN+A    C +C   R   A V
Subjt:  -TIPPGWKSGDWICPRMGCGVHNYASRTECFKCKTPRDFGAAV

O95218 Zinc finger Ran-binding domain-containing protein 22.6e-0432.14Show/hide
Query:  GDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPG----WKSGDWICPRMGCGVHNYASRTECFKCKTPR
        GDW C    CG  N+A R +C +CG  K+       A       T+       + + DW C    C   N+A R+EC  C TP+
Subjt:  GDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPG----WKSGDWICPRMGCGVHNYASRTECFKCKTPR

Q01844 RNA-binding protein EWS4.0e-0554.55Show/hide
Query:  KSGDWICPRMGCGVHNYASRTECFKCKTPRDFG
        ++GDW CP  GCG  N+A RTEC +CK P+  G
Subjt:  KSGDWICPRMGCGVHNYASRTECFKCKTPRDFG

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 25.2e-0533.33Show/hide
Query:  GDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPG----WKSGDWICPRMGCGVHNYASRTECFKCKTPR
        GDW C    CG  N+A R +C +CG  K+       A       T+       + + DW C    CG  N+A R+EC  C TP+
Subjt:  GDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPG----WKSGDWICPRMGCGVHNYASRTECFKCKTPR

Q61545 RNA-binding protein EWS4.0e-0554.55Show/hide
Query:  KSGDWICPRMGCGVHNYASRTECFKCKTPRDFG
        ++GDW CP  GCG  N+A RTEC +CK P+  G
Subjt:  KSGDWICPRMGCGVHNYASRTECFKCKTPRDFG

Arabidopsis top hitse value%identityAlignment
AT1G48570.1 zinc finger (Ran-binding) family protein3.4e-0739.71Show/hide
Query:  GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKC
        GDW+C  C  +NF + ++C +C   K  GP   T   N  E   GDW CT   CG  N+AS   C +C
Subjt:  GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKC

AT2G17975.1 zinc finger (Ran-binding) family protein6.7e-1635.57Show/hide
Query:  GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKS-------AYPSDSAA-----YQYGSDA
        GDW C  C+N N+  R  C+RC  P+    D +T   +      GDW CT   C  +NYASR  C KCG  K        A P  S       +  G ++
Subjt:  GDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKS-------AYPSDSAA-----YQYGSDA

Query:  TIPPG-----------------WKSGDWICPRMGCGVHNYASRTECFKC
           PG                 W+SGDWIC    CG HNY+SR +C KC
Subjt:  TIPPG-----------------WKSGDWICPRMGCGVHNYASRTECFKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein4.3e-5563.97Show/hide
Query:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQ---YGSD-ATIP
        MSW+ GDW+C ACQ+ NFKKRE+C +C YPK+GG D STY YN TE +AGDWYC  L CG+HNYASR +C++CG  K  Y       Q   YG+D A  P
Subjt:  MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQ---YGSD-ATIP

Query:  PGWKSGDWICPRMGCGVHNYASRTECFKCKTPRDFG
        PGWK+GDW+CPR+GCGVHNYASR ECFKCKT RD+G
Subjt:  PGWKSGDWICPRMGCGVHNYASRTECFKCKTPRDFG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein4.3e-3140.26Show/hide
Query:  GDWICNACQNVNFKKREACHRCA-------------YPKYGGPDPSTYTY-NNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGS
        GDW C +C ++NF++R++C RC              +  +GG   S + +   ++   GDWYCT   CG HN+ASR  CFKCG FK    +       G 
Subjt:  GDWICNACQNVNFKKREACHRCA-------------YPKYGGPDPSTYTY-NNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGS

Query:  DATIP--------PG------WKSGDWICPRMGCGVHNYASRTECFKCKTPRDF
         A           PG      WKSGDWIC R+GC  HN+ASR ECF+C  PRDF
Subjt:  DATIP--------PG------WKSGDWICPRMGCGVHNYASRTECFKCKTPRDF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein3.3e-3139.62Show/hide
Query:  GDWICNACQNVNFKKREACHRCAYPKYGG------------PDPSTYTYN-NTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYG-S
        GDW C  C ++NF++R++C RC  P+ GG            P  S++ +N   +   GDWYC    CG HN+A+R +CFKCGA K  +   SAA   G  
Subjt:  GDWICNACQNVNFKKREACHRCAYPKYGG------------PDPSTYTYN-NTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYG-S

Query:  DATIPP--------------------GWKSGDWICPRMGCGVHNYASRTECFKCKTPRD
        D  + P                     WKSGDWICPR GC  HN+ASR+ECF+C  P++
Subjt:  DATIPP--------------------GWKSGDWICPRMGCGVHNYASRTECFKCKTPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTGGTCATCAGGAGACTGGATATGCAACGCTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGCGCTTACCCCAAGTATGGAGGCCCAGACCC
TTCAACTTACACTTACAACAACACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCCTCACCTGCGGAGCTCACAATTACGCTAGCCGCCCCAACTGCTTTAAATGTG
GTGCGTTTAAGTCCGCCTATCCTTCTGACTCTGCTGCCTATCAGTATGGATCTGATGCAACTATCCCGCCTGGATGGAAATCTGGAGACTGGATTTGCCCAAGAATGGGA
TGCGGAGTGCATAATTATGCAAGCAGGACAGAGTGTTTTAAATGCAAAACGCCAAGAGATTTCGGTGCTGCAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTGGTCATCAGGAGACTGGATATGCAACGCTTGCCAGAACGTAAACTTCAAGAAAAGAGAAGCCTGCCATCGTTGCGCTTACCCCAAGTATGGAGGCCCAGACCC
TTCAACTTACACTTACAACAACACGGAGGCGTTGGCCGGAGACTGGTACTGCACCACCCTCACCTGCGGAGCTCACAATTACGCTAGCCGCCCCAACTGCTTTAAATGTG
GTGCGTTTAAGTCCGCCTATCCTTCTGACTCTGCTGCCTATCAGTATGGATCTGATGCAACTATCCCGCCTGGATGGAAATCTGGAGACTGGATTTGCCCAAGAATGGGA
TGCGGAGTGCATAATTATGCAAGCAGGACAGAGTGTTTTAAATGCAAAACGCCAAGAGATTTCGGTGCTGCAGTTTAA
Protein sequenceShow/hide protein sequence
MSWSSGDWICNACQNVNFKKREACHRCAYPKYGGPDPSTYTYNNTEALAGDWYCTTLTCGAHNYASRPNCFKCGAFKSAYPSDSAAYQYGSDATIPPGWKSGDWICPRMG
CGVHNYASRTECFKCKTPRDFGAAV