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Carg12156 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12156
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAlba domain-containing protein
Genome locationCarg_Chr11:2492543..2494294
RNA-Seq ExpressionCarg12156
SyntenyCarg12156
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150019.1 uncharacterized protein At2g34160 [Cucumis sativus]7.6e-5998.46Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEEREN DGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

XP_022924689.1 uncharacterized protein At2g34160-like [Cucurbita moschata]3.1e-60100Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEERENGDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

XP_022961070.1 uncharacterized protein At2g34160-like [Cucurbita moschata]2.6e-5999.23Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEEREN DGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

XP_022972044.1 uncharacterized protein At2g34160-like [Cucurbita maxima]3.1e-60100Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEERENGDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

XP_022987902.1 uncharacterized protein At2g34160-like [Cucurbita maxima]9.9e-5998.46Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAA EEREN DGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

TrEMBL top hitse value%identityAlignment
A0A0A0LZB6 Alba domain-containing protein3.7e-5998.46Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEEREN DGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

A0A5A7TV88 Alba domain-containing protein3.7e-5998.46Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSI LTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEEREN DGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

A0A6J1E9X3 uncharacterized protein At2g34160-like1.5e-60100Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEERENGDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

A0A6J1HAY2 uncharacterized protein At2g34160-like1.3e-5999.23Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEEREN DGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

A0A6J1IAB5 uncharacterized protein At2g34160-like1.5e-60100Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EIVLGKTENFDELMAAAAEERENGDGEEQS
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.0e-5081.54Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIATVVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EI L K+E FDELMAAA EE+E+ + + Q+
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein8.7e-5383.08Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEITEGVN++ L  D+QKKNRIQVSNTKKPLFFYVNLAKRYMQQY +VELSALGMAIATVVTVAEILKNNG A+EKKIMTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EI L K+E FDELMAAA EE+E  + +EQ+
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

AT2G34160.1 Alba DNA/RNA-binding protein7.3e-5281.54Show/hide
Query:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI
        MEEIT+GVN++ L  DSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIATVVTV EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAKI
Subjt:  MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKI

Query:  EIVLGKTENFDELMAAAAEERENGDGEEQS
        EI L K+E FDELMAAA EE+E+ + + Q+
Subjt:  EIVLGKTENFDELMAAAAEERENGDGEEQS

AT3G04620.1 Alba DNA/RNA-binding protein3.5e-3876.24Show/hide
Query:  TADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDEL
        T ++ KKNRIQVSNTKKPLFFYVNLAKRY+QQ+NEVELSALGMAI TVVT++EILKNNGLA EKK++TSTV +KD+++G+ VQKAKIEIVLGK++ FD L
Subjt:  TADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDEL

Query:  M
        +
Subjt:  M


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGATAACAGAGGGTGTTAACTCCATCGCCTTGACGGCTGACTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCACTCTTCTTCTATGTTAA
TCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGAATGGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGG
CTCTAGAAAAGAAGATCATGACTTCTACCGTTGATATCAAGGATGATTCTCGGGGGAGACCAGTTCAGAAAGCTAAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTT
GATGAACTGATGGCTGCTGCTGCGGAGGAAAGGGAAAACGGAGATGGTGAAGAGCAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ACACAAATACCTGATTTTTAGATAATTTCAACCCTTTTCTTCACTGCTCAACCCCTTTCTCAAATTCGCGTGAGTTTTAGGGTTAGGGTTTTAGCATTGAGAAGCTCTCA
ATGGAAGAGATAACAGAGGGTGTTAACTCCATCGCCTTGACGGCTGACTCGCAGAAGAAGAATCGAATTCAAGTCTCCAACACCAAGAAGCCACTCTTCTTCTATGTTAA
TCTCGCCAAGAGGTATATGCAGCAGTACAATGAGGTCGAGCTTTCTGCGCTTGGAATGGCCATTGCAACTGTTGTGACTGTTGCGGAAATTCTGAAAAACAATGGACTGG
CTCTAGAAAAGAAGATCATGACTTCTACCGTTGATATCAAGGATGATTCTCGGGGGAGACCAGTTCAGAAAGCTAAGATTGAGATTGTGCTGGGGAAAACTGAAAACTTT
GATGAACTGATGGCTGCTGCTGCGGAGGAAAGGGAAAACGGAGATGGTGAAGAGCAGAGTTGAAAAGATTTTTTTTTTCTTTTCTTTTTTTCCCTGTTCGTATCCTCCTT
GTGGATGAGTCTGGTTATTTCCTTATATCTGGTCTCTCTGTTTTTAATTAACGTTAGTGAACAAGTGGTTTATTTACTGATGTAGGCTTTTAGTTGGTGAACCATTTATT
TGCCCTTTTTTAGATACTATGGGATATCTTCGTTTAAGAGCGTGGAAACCTAATCTGAGTTACCTTTCAAAATCAAGTTTATATTATTATTTTGATGCATCAATTTTGGT
AAACATGCATTCAATTGGTGATCTGCTTC
Protein sequenceShow/hide protein sequence
MEEITEGVNSIALTADSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVTVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEIVLGKTENF
DELMAAAAEERENGDGEEQS