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Carg12179 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12179
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHMA domain-containing protein
Genome locationCarg_Chr11:2585247..2586243
RNA-Seq ExpressionCarg12179
SyntenyCarg12179
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006121 - Heavy metal-associated domain, HMA
IPR036163 - Heavy metal-associated domain superfamily
IPR044526 - Protein SODIUM POTASSIUM ROOT DEFECTIVE 1/2/3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587944.1 Protein SODIUM POTASSIUM ROOT DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5096.19Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
        MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME

Query:  GKTRF
        G + +
Subjt:  GKTRF

KAG7021832.1 hypothetical protein SDJN02_15560 [Cucurbita argyrosperma subsp. argyrosperma]4.3e-55100Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
        MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME

Query:  GKTRFFTII
        GKTRFFTII
Subjt:  GKTRFFTII

XP_022933309.1 heavy metal-associated isoprenylated plant protein 45-like [Cucurbita moschata]1.2e-4995.24Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
        MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLI THKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME

Query:  GKTRF
        G + +
Subjt:  GKTRF

XP_022973748.1 heavy metal-associated isoprenylated plant protein 45-like [Cucurbita maxima]1.2e-4995.24Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
        MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLI THKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME

Query:  GKTRF
        G + +
Subjt:  GKTRF

XP_023531514.1 heavy metal-associated isoprenylated plant protein 45-like [Cucurbita pepo subsp. pepo]4.1e-5095.24Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
        MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIP+HKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME

Query:  GKTRF
        G + +
Subjt:  GKTRF

TrEMBL top hitse value%identityAlignment
A0A0A0LZH7 HMA domain-containing protein9.3e-3272.97Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSM--EEQEDE-FDKLPLIPTHK---DQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEK
        MGKL KK+ K  DCFS S   +SCSS SCFCINSM  E++EDE FDK PLI  +    +QLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHC+GCARKVEK
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSM--EEQEDE-FDKLPLIPTHK---DQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEK

Query:  HISKMEGKTRF
        HISKMEG + +
Subjt:  HISKMEGKTRF

A0A1S3CJJ6 uncharacterized protein LOC1035015431.8e-3072.07Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSM--EEQEDE-FDKLPLIPTHK---DQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEK
        MGKL KK+ K  DCFS S   +SCSS SCFCINSM  E++EDE FDK PLI  +    +QL TLKDVVNGNQTLAFQLKPKMVTLRVSMHC+GCARKVEK
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSM--EEQEDE-FDKLPLIPTHK---DQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEK

Query:  HISKMEGKTRF
        HISKMEG + +
Subjt:  HISKMEGKTRF

A0A6J1CUT7 protein SODIUM POTASSIUM ROOT DEFECTIVE 12.3e-3072.73Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSME-EQEDEFDKLPL--IPTH--KDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKH
        MGK  KKI+  LDCFS     SSCS  SCFCINSME +QEDEFDK PL  +PTH  K+Q   LKD+VNGNQTLAFQLKPKMV LRVSMHCRGCARKVEKH
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSME-EQEDEFDKLPL--IPTH--KDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKH

Query:  ISKMEGKTRF
        ISKMEG + +
Subjt:  ISKMEGKTRF

A0A6J1EZE4 heavy metal-associated isoprenylated plant protein 45-like5.8e-5095.24Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
        MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLI THKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME

Query:  GKTRF
        G + +
Subjt:  GKTRF

A0A6J1IE28 heavy metal-associated isoprenylated plant protein 45-like5.8e-5095.24Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
        MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLI THKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKME

Query:  GKTRF
        G + +
Subjt:  GKTRF

SwissProt top hitse value%identityAlignment
Q58FZ0 Protein SODIUM POTASSIUM ROOT DEFECTIVE 27.9e-0454.84Show/hide
Query:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF
        ++V L+VS+HCRGC  KV KH+++M+G T F
Subjt:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF

Q8LDS4 Protein SODIUM POTASSIUM ROOT DEFECTIVE 12.1e-0458.06Show/hide
Query:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF
        ++V LRVS+HC+GCA KV+KH+SK++G T +
Subjt:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF

Arabidopsis top hitse value%identityAlignment
AT2G28660.1 Chloroplast-targeted copper chaperone protein8.7e-0664.52Show/hide
Query:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF
        ++V LRVS+HC+GC  KV KHISKMEG T +
Subjt:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF

AT2G37390.1 Chloroplast-targeted copper chaperone protein5.6e-0554.84Show/hide
Query:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF
        ++V L+VS+HCRGC  KV KH+++M+G T F
Subjt:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF

AT3G24450.1 Heavy metal transport/detoxification superfamily protein2.5e-2152.78Show/hide
Query:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKD---QLPTLKDVV--NGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKH
        MGKL +KI +  DC  L L  + C   SCFC+N++ ++E+EF+K PLI +  +   ++  LKDVV  +  QTLAF LKPK+V L+VSMHC GCA+KVEKH
Subjt:  MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKD---QLPTLKDVV--NGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKH

Query:  ISKMEGKT
        ISK++G T
Subjt:  ISKMEGKT

AT5G02600.1 Heavy metal transport/detoxification superfamily protein1.5e-0558.06Show/hide
Query:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF
        ++V LRVS+HC+GCA KV+KH+SK++G T +
Subjt:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF

AT5G02600.2 Heavy metal transport/detoxification superfamily protein1.5e-0558.06Show/hide
Query:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF
        ++V LRVS+HC+GCA KV+KH+SK++G T +
Subjt:  KMVTLRVSMHCRGCARKVEKHISKMEGKTRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGCTGCACAAGAAAATTTCGAAGGCGTTGGACTGTTTTAGTCTTAGTCTTGGTCCCTCCTCTTGTAGCTCAGGCTCTTGTTTTTGCATAAACTCCATGGAAGA
GCAGGAAGATGAGTTTGATAAACTGCCCCTCATACCCACTCACAAAGACCAGCTGCCCACGTTGAAGGACGTTGTCAATGGAAACCAGACCTTGGCCTTTCAACTCAAGC
CCAAGATGGTGACTCTAAGGGTATCCATGCACTGTAGAGGCTGTGCAAGAAAGGTGGAGAAACACATTTCAAAAATGGAAGGTAAAACACGATTCTTTACAATAATATAA
mRNA sequenceShow/hide mRNA sequence
TGGGCGGTGCCAAAACCCTCTGCTTTTTGCTTCCTTCCTGCTCTGTTATATTCAACTCCAACAATCATTTTATTGAATTATGTATTATAAATTTGGGGGCAGCCCAGGTG
AGAGGCATTACATATTTGGGTGCCTTTAAATTCCCGGATTTTGCTCTAAATACCGTAAAGGTTCCACCTTTTTTCCTACTTTAAATACACTTGCGCATTCCACCTGCCAC
TCTCCCAAATTCCTCACTGAGATAGCCATGGACACACTTGAAGGGTGTCCCTGAAATTTACCAAGATTCTTGTTGTGATCATGGGGAAGCTGCACAAGAAAATTTCGAAG
GCGTTGGACTGTTTTAGTCTTAGTCTTGGTCCCTCCTCTTGTAGCTCAGGCTCTTGTTTTTGCATAAACTCCATGGAAGAGCAGGAAGATGAGTTTGATAAACTGCCCCT
CATACCCACTCACAAAGACCAGCTGCCCACGTTGAAGGACGTTGTCAATGGAAACCAGACCTTGGCCTTTCAACTCAAGCCCAAGATGGTGACTCTAAGGGTATCCATGC
ACTGTAGAGGCTGTGCAAGAAAGGTGGAGAAACACATTTCAAAAATGGAAGGTAAAACACGATTCTTTACAATAATATAATATTGTTCGCTTCGAGTATAACCTCATTAT
CGTTGAATGAGCAGGAGTGAGCTCGTACACAATAGACCTGGAGACTAAGATGGTGATCATTATTGGGGACATTCTGCCATTTGAAGTGGTGGAGAGTGTCTCTAAAGTCA
AAAACGCACAGCTCTGGCAATCCTCGCTAGCTTGATCATTATTCCATATGAACAACACCATTATTAATTAAATGTGTACATCGTTGGAAGACAGGGGGATCGGAATTTGG
CAGAGAATATTTTTTATTCTCACTAATTTTGTGCTTTTTTTCTT
Protein sequenceShow/hide protein sequence
MGKLHKKISKALDCFSLSLGPSSCSSGSCFCINSMEEQEDEFDKLPLIPTHKDQLPTLKDVVNGNQTLAFQLKPKMVTLRVSMHCRGCARKVEKHISKMEGKTRFFTII