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Carg12204 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12204
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDynein light chain
Genome locationCarg_Chr11:2690372..2690919
RNA-Seq ExpressionCarg12204
SyntenyCarg12204
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150050.1 dynein light chain 1, cytoplasmic [Cucumis sativus]1.0e-3686.96Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS
        MLEGKATVK+TDMSEKMQ+HA ASAS ALDLFDVSD LSLA+HIKK+FD +YGSGWQCVVGSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS

XP_008462685.1 PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]7.6e-3786.96Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS
        MLEGKATVK+TDMSEKMQ+HA ASASHALDLFDVSD LSLA++IKK+FD +YGSGWQCVVGSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS

XP_014508216.1 dynein light chain 1, cytoplasmic [Vigna radiata var. radiata]2.9e-3681.72Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
        MLEGKA VK+TDMS KMQIHA A+ASHALDL+DVSDC+S+AAHIKKEFD  YG+GWQCVVGSNFGC+FTHS GTFIYF+LETLNFLIFK +S+
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN

XP_022933771.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]2.2e-44100Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
        MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN

XP_038878771.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]2.1e-3990.32Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
        MLEGKATVK+TDMSEKMQ HA ASASHALDLFDVSD LSLAAHIKK+FDR+YGSGWQCVVGSNFGCFFTHSKG+FIYFSLETLNFLIFK+ SN
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN

TrEMBL top hitse value%identityAlignment
A0A1S3CJ38 Dynein light chain3.7e-3786.96Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS
        MLEGKATVK+TDMSEKMQ+HA ASASHALDLFDVSD LSLA++IKK+FD +YGSGWQCVVGSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS

A0A1S3UQ79 Dynein light chain1.4e-3681.72Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
        MLEGKA VK+TDMS KMQIHA A+ASHALDL+DVSDC+S+AAHIKKEFD  YG+GWQCVVGSNFGC+FTHS GTFIYF+LETLNFLIFK +S+
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN

A0A6J1CTX2 Dynein light chain1.4e-3688.76Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFK
        MLEGK  VK+TDMSEKMQIHA ASASHALDLFDVSDCLSLAAHIKKEFDR+YG GWQCVVGSNFG FFTHS  TFIYF+LETLNFLIFK
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFK

A0A6J1EZZ1 Dynein light chain1.1e-44100Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
        MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN

A0A6J1I806 Dynein light chain1.1e-44100Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
        MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN

SwissProt top hitse value%identityAlignment
P61273 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA

P61285 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA

P63167 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA

P63168 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA

P63169 Dynein light chain 1, cytoplasmic1.9e-1444.44Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA
        M + KA +K  DMSE+MQ  +   A+ AL+ +++     +AAHIKKEFD+ Y   W C+VG NFG + TH    FIYF L  +  L+FK+
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKA

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 111.1e-1771.19Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCV
        MLEGKA V+ +DM  KMQ+ A A AS ALDLFDV DC S+A HIKKEFD  YGSGWQCV
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.2e-3578.26Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS
        MLEGKA V+ +DM  KMQ+ A A AS ALDLFDV DC S+A HIKKEFD  YGSGWQCVVGSNFGCFFTHSKGTFIYF LETL FLIFK AS
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS

AT3G16120.1 Dynein light chain type 1 family protein2.9e-3475Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS
        MLEGKA V++TDM  KMQ+ A   AS +LDLFDV D +S+AAHIKKEFD  YGSGWQCVVG+NFGCFFTHSKGTFIYF L TLNFLIFK A+
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS

AT4G27360.1 Dynein light chain type 1 family protein5.1e-2356.04Show/hide
Query:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAA
        MLEGKA +  TDM + M+  A + AS ALD FDV++   +A  IKKEFDRSYGSGWQC+VG++FG F TH  G FI+FS+ +L  L+FK +
Subjt:  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAA

AT5G20110.1 Dynein light chain type 1 family protein8.8e-1548.72Show/hide
Query:  DMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFK
        DM   MQ HA   A   LD  +      +A ++KKEFD+ YG  W C+VGS+FG F THS G FIYFS++ L  L+FK
Subjt:  DMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGGAAAGCCACCGTCAAACAAACCGACATGTCGGAGAAGATGCAGATTCACGCCAAGGCCTCTGCATCTCACGCCCTCGATCTCTTCGACGTCTCCGATTG
CCTCTCGCTTGCTGCACATATCAAGAAGGAATTTGATCGGAGCTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCAAAGGGGA
CCTTCATCTATTTTTCCCTTGAAACTCTCAATTTTCTCATCTTTAAAGCTGCTTCCAACTAA
mRNA sequenceShow/hide mRNA sequence
TATATACACGCTAGTATTATATAATAAATTCCATTATAATCCTCTCTTTGCCTCTTCCTGTGTCGTTCTGATAATATAGAAGATCATGTTGGAAGGGAAAGCCACCGTCA
AACAAACCGACATGTCGGAGAAGATGCAGATTCACGCCAAGGCCTCTGCATCTCACGCCCTCGATCTCTTCGACGTCTCCGATTGCCTCTCGCTTGCTGCACATATCAAG
AAGGAATTTGATCGGAGCTATGGGAGTGGGTGGCAATGTGTGGTGGGTTCCAATTTCGGCTGCTTCTTCACTCATTCAAAGGGGACCTTCATCTATTTTTCCCTTGAAAC
TCTCAATTTTCTCATCTTTAAAGCTGCTTCCAACTAATTATTTCCAAAATTACCATTTCAAAGCACCACAAATGCTTCCATCTTCAGGGGCACCCTCGTCCTTTCCCCTC
CTCCTCTCTCTAAATTACATGGAACCAACCATG
Protein sequenceShow/hide protein sequence
MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVVGSNFGCFFTHSKGTFIYFSLETLNFLIFKAASN