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Carg12209 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12209
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRanBP2-type domain-containing protein
Genome locationCarg_Chr11:2711068..2713709
RNA-Seq ExpressionCarg12209
SyntenyCarg12209
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587972.1 hypothetical protein SDJN03_16537, partial [Cucurbita argyrosperma subsp. sororia]2.0e-7198.56Show/hide
Query:  MGGEISGGGSTRCQHNKCGDPNWGTLIYGFTNVLPAFFNDLSAFRLQTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGG
        MGGEISGGGSTRCQHNKCGDPNWGTLIYGFTNVLPAFFNDLSAFRLQTDRFRGCSLKQAEESGKQGE MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGG
Subjt:  MGGEISGGGSTRCQHNKCGDPNWGTLIYGFTNVLPAFFNDLSAFRLQTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGG

Query:  VGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLEL
        VGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADL L
Subjt:  VGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLEL
KAG7021862.1 hypothetical protein SDJN02_15590, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-104100Show/hide
Query:  MGGEISGGGSTRCQHNKCGDPNWGTLIYGFTNVLPAFFNDLSAFRLQTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGG
        MGGEISGGGSTRCQHNKCGDPNWGTLIYGFTNVLPAFFNDLSAFRLQTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGG
Subjt:  MGGEISGGGSTRCQHNKCGDPNWGTLIYGFTNVLPAFFNDLSAFRLQTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGG

Query:  VGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELRRFLVLYTLIGLLSWMVICSCFSWTPLKNFAKIVALCVADCKNLDLEKGIE
        VGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELRRFLVLYTLIGLLSWMVICSCFSWTPLKNFAKIVALCVADCKNLDLEKGIE
Subjt:  VGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELRRFLVLYTLIGLLSWMVICSCFSWTPLKNFAKIVALCVADCKNLDLEKGIE
XP_004142516.1 uncharacterized protein LOC101209122 isoform X1 [Cucumis sativus]1.9e-2690.28Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSG RVGRG+DYEAGEVPRDPPQYSRLDRYS DL  R
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
XP_008462733.1 PREDICTED: uncharacterized protein LOC103501026 isoform X1 [Cucumis melo]5.6e-2690.28Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSG RVGRGSDYEAGEVPRDPPQYSRL RYS DL  R
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
XP_022961315.1 uncharacterized protein LOC111461847 isoform X2 [Cucurbita moschata]5.6e-2690.28Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
        MGSR KDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSG RVGRGSDYEAGEVPRDPPQYSRLDRYS DL  R
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
TrEMBL top hitse value%identityAlignment
A0A0A0M109 Uncharacterized protein1.6e-2692.75Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADL
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSG RVGRG+DYEAGEVPRDPPQYSRLDRYS DL
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADL
A0A5D3E321 TATA-binding protein-associated factor 2N2.7e-2690.28Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
        MGSRDKDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSG RVGRGSDYEAGEVPRDPPQYSRL RYS DL  R
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
A0A6J1HA13 uncharacterized protein LOC111461847 isoform X32.7e-2690.28Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
        MGSR KDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSG RVGRGSDYEAGEVPRDPPQYSRLDRYS DL  R
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
A0A6J1HA20 uncharacterized protein LOC111461847 isoform X62.7e-2690.28Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
        MGSR KDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSG RVGRGSDYEAGEVPRDPPQYSRLDRYS DL  R
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
A0A6J1HBT6 uncharacterized protein LOC111461847 isoform X22.7e-2690.28Show/hide
Query:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
        MGSR KDSTT+HQPLLSSLVVRPSNSDGGGGGVG TSG RVGRGSDYEAGEVPRDPPQYSRLDRYS DL  R
Subjt:  MGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSADLELR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28990.1 RNA-binding protein-related3.6e-0747.83Show/hide
Query:  MGSRDKDSTT-NHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSAD
        MGS +K+ TT +H P +SSLVVRPS S+    G  A          DYE GEV RD P ++R DRY  D
Subjt:  MGSRDKDSTT-NHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSAD
AT4G28990.2 RNA-binding protein-related1.2e-0739.36Show/hide
Query:  MGSRDKDSTT-NHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSAD----------LELRRFLVLYTLIGL
        MGS +K+ TT +H P +SSLVVRPS S+    G  A          DYE GEV RD P ++R DRY  D          L L+  +++Y L+ +
Subjt:  MGSRDKDSTT-NHQPLLSSLVVRPSNSDGGGGGVGATSGARVGRGSDYEAGEVPRDPPQYSRLDRYSAD----------LELRRFLVLYTLIGL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGCGAAATCAGCGGTGGTGGAAGCACCAGGTGTCAGCACAACAAATGCGGTGATCCGAATTGGGGTACGTTAATTTATGGGTTTACAAATGTACTCCCCGCCTT
TTTCAACGATTTATCGGCGTTCAGACTTCAGACGGACCGGTTTCGTGGCTGCTCTTTGAAGCAGGCAGAAGAATCAGGAAAACAAGGCGAGAGGATGGGTTCGAGGGATA
AAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAGTGGCGCCCGCGTTGGT
CGTGGAAGCGATTACGAGGCCGGTGAGGTTCCTCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGCTGATTTGGAACTCCGCAGGTTCCTTGTACTTTATAC
GCTTATTGGTCTTTTGTCCTGGATGGTCATATGCTCATGTTTTAGTTGGACTCCATTGAAGAATTTTGCCAAGATCGTTGCACTTTGTGTTGCCGACTGCAAGAACTTAG
ATCTTGAGAAGGGCATTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGCGAAATCAGCGGTGGTGGAAGCACCAGGTGTCAGCACAACAAATGCGGTGATCCGAATTGGGGTACGTTAATTTATGGGTTTACAAATGTACTCCCCGCCTT
TTTCAACGATTTATCGGCGTTCAGACTTCAGACGGACCGGTTTCGTGGCTGCTCTTTGAAGCAGGCAGAAGAATCAGGAAAACAAGGCGAGAGGATGGGTTCGAGGGATA
AAGACTCTACGACTAACCACCAGCCGTTATTGAGCAGCCTGGTAGTACGGCCATCGAATAGTGACGGAGGTGGTGGCGGAGTCGGTGCAACCAGTGGCGCCCGCGTTGGT
CGTGGAAGCGATTACGAGGCCGGTGAGGTTCCTCGTGACCCTCCACAATATTCTCGATTGGATCGATATTCAGCTGATTTGGAACTCCGCAGGTTCCTTGTACTTTATAC
GCTTATTGGTCTTTTGTCCTGGATGGTCATATGCTCATGTTTTAGTTGGACTCCATTGAAGAATTTTGCCAAGATCGTTGCACTTTGTGTTGCCGACTGCAAGAACTTAG
ATCTTGAGAAGGGCATTGAGTAA
Protein sequenceShow/hide protein sequence
MGGEISGGGSTRCQHNKCGDPNWGTLIYGFTNVLPAFFNDLSAFRLQTDRFRGCSLKQAEESGKQGERMGSRDKDSTTNHQPLLSSLVVRPSNSDGGGGGVGATSGARVG
RGSDYEAGEVPRDPPQYSRLDRYSADLELRRFLVLYTLIGLLSWMVICSCFSWTPLKNFAKIVALCVADCKNLDLEKGIE