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Carg12256 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12256
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S30
Genome locationCarg_Chr11:2961092..2963642
RNA-Seq ExpressionCarg12256
SyntenyCarg12256
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006846 - Ribosomal protein S30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBG98886.1 Ribosomal protein S30 family protein [Prunus dulcis]2.7e-2477.27Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK--------AEDEKLYNELNEVHDSLE
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK         E  K +    E  DS+E
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK--------AEDEKLYNELNEVHDSLE

KAF1873706.1 hypothetical protein Lal_00027744 [Lupinus albus]8.3e-2692.96Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNE
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK E E   NE
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNE

KAG7021908.1 40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-83100Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNELNEVHDSLEISVSVIVSLIVGKSRSSVCL
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNELNEVHDSLEISVSVIVSLIVGKSRSSVCL
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNELNEVHDSLEISVSVIVSLIVGKSRSSVCL

Query:  QQANVPVRTFLQSRSSSQRSRRILGMLHNRMQSLLLPLKVAYQGRSSNPTCPQRLHENARKDLGHSV
        QQANVPVRTFLQSRSSSQRSRRILGMLHNRMQSLLLPLKVAYQGRSSNPTCPQRLHENARKDLGHSV
Subjt:  QQANVPVRTFLQSRSSSQRSRRILGMLHNRMQSLLLPLKVAYQGRSSNPTCPQRLHENARKDLGHSV

QHO19817.1 40S ribosomal protein [Arachis hypogaea]9.2e-2598.44Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAE
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK E
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAE

QHO49491.1 40S ribosomal protein [Arachis hypogaea]1.6e-2476.14Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNELNEVHDSLEISVSVIVS
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK  +  +   +   H      + VIVS
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNELNEVHDSLEISVSVIVS

TrEMBL top hitse value%identityAlignment
A0A368PSS0 40S ribosomal protein S301.7e-24100Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A4Y1R4C8 40S ribosomal protein S301.3e-2477.27Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK--------AEDEKLYNELNEVHDSLE
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK         E  K +    E  DS+E
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK--------AEDEKLYNELNEVHDSLE

A0A6A5MHQ8 40S ribosomal protein S304.0e-2692.96Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNE
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK E E   NE
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNE

F6HGX1 40S ribosomal protein S302.0e-2591.55Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNE
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKA  E    E
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNE

M5WRX6 40S ribosomal protein S301.7e-24100Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

SwissProt top hitse value%identityAlignment
P49689 40S ribosomal protein S303.9e-2696.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

P62860 40S ribosomal protein S301.1e-1779.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62861 40S ribosomal protein S301.1e-1779.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62862 40S ribosomal protein S301.1e-1779.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62866 40S ribosomal protein S301.1e-1779.31Show/hide
Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

Arabidopsis top hitse value%identityAlignment
AT2G19750.1 Ribosomal protein S30 family protein2.8e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT4G29390.1 Ribosomal protein S30 family protein2.8e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT5G56670.1 Ribosomal protein S30 family protein2.8e-2796.77Show/hide
Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAGGTTCACGGATCTTTAGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTTGCGAAGCAGGACAAGAAGAAAAAGCCCCGGGGACGCGCACACAAGCG
TATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCCGAGAAGGCTGAAGATGAAAAGCTGTATAATGAATTGAATG
AAGTTCACGATTCCCTTGAAATTTCCGTATCTGTTATAGTTTCACTCATTGTTGGCAAGAGTAGGAGTTCAGTGTGCTTACAGCAGGCGAATGTCCCGGTTCGAACTTTC
CTACAGTCTCGTTCTTCATCCCAACGAAGTAGAAGAATCCTGGGAATGCTTCACAATAGAATGCAAAGTCTTCTGCTCCCATTAAAGGTTGCATATCAAGGACGTTCTTC
GAACCCAACATGTCCCCAGCGACTGCACGAAAATGCTCGTAAAGATCTTGGTCATTCAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAGGTTCACGGATCTTTAGCTCGTGCTGGGAAGGTGAGAGGTCAAACTCCGAAAGTTGCGAAGCAGGACAAGAAGAAAAAGCCCCGGGGACGCGCACACAAGCG
TATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTTGGAAAGAAGAGAGGACCCAACTCCTCCGAGAAGGCTGAAGATGAAAAGCTGTATAATGAATTGAATG
AAGTTCACGATTCCCTTGAAATTTCCGTATCTGTTATAGTTTCACTCATTGTTGGCAAGAGTAGGAGTTCAGTGTGCTTACAGCAGGCGAATGTCCCGGTTCGAACTTTC
CTACAGTCTCGTTCTTCATCCCAACGAAGTAGAAGAATCCTGGGAATGCTTCACAATAGAATGCAAAGTCTTCTGCTCCCATTAAAGGTTGCATATCAAGGACGTTCTTC
GAACCCAACATGTCCCCAGCGACTGCACGAAAATGCTCGTAAAGATCTTGGTCATTCAGTGTAA
Protein sequenceShow/hide protein sequence
MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEKAEDEKLYNELNEVHDSLEISVSVIVSLIVGKSRSSVCLQQANVPVRTF
LQSRSSSQRSRRILGMLHNRMQSLLLPLKVAYQGRSSNPTCPQRLHENARKDLGHSV