; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg12332 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12332
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTHO complex subunit 4A
Genome locationCarg_Chr01:2990746..2993108
RNA-Seq ExpressionCarg12332
SyntenyCarg12332
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR025715 - Chromatin target of PRMT1 protein, C-terminal
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036889.1 THO complex subunit 4A [Cucurbita argyrosperma subsp. argyrosperma]3.2e-127100Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

XP_022948705.1 THO complex subunit 4A-like isoform X1 [Cucurbita moschata]7.9e-12699.17Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRF NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

XP_022997829.1 THO complex subunit 4A-like isoform X1 [Cucurbita maxima]3.5e-12698.76Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLE+VGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRN+GGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

XP_022997830.1 THO complex subunit 4A-like isoform X2 [Cucurbita maxima]1.9e-12498.35Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLE+VGANIVTPVLPASSNPNFGNSSGFLRG GRALGRN+GGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

XP_023523167.1 THO complex subunit 4A-like isoform X1 [Cucurbita pepo subsp. pepo]3.5e-12699.17Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPA SNPNFGNSSGFLRGSGRALGRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

TrEMBL top hitse value%identityAlignment
A0A1S3C5R6 THO complex subunit 4A2.7e-10886.18Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        M +PLD SLDDIIKNNKKSGSSNFR RGGASSGP PSRRF NRGLNRA PYS +KAPET WSHD+FVDHG AYPSHP RAS IETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAE++FSR ADALAAIKRYNNVQLDGKPMKLEIVG NIVTP +PA SN +FGN +GF RG GRA+GRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGR----GNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGR    G+GRG GEKLSAEDLDADLDKYHEEAMQIN
Subjt:  RGRGPGRGGRGR----GNGRGGGEKLSAEDLDADLDKYHEEAMQIN

A0A6J1G9Y5 THO complex subunit 4A-like isoform X22.1e-12498.76Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRF NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRG GRALGRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

A0A6J1GAN0 THO complex subunit 4A-like isoform X13.8e-12699.17Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRF NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

A0A6J1KAZ3 THO complex subunit 4A-like isoform X29.4e-12598.35Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLE+VGANIVTPVLPASSNPNFGNSSGFLRG GRALGRN+GGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

A0A6J1KCN1 THO complex subunit 4A-like isoform X11.7e-12698.76Show/hide
Query:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
        MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN
Subjt:  MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG
        EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLE+VGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRN+GGG
Subjt:  EDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGG

Query:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        RGRGPGRGGRGRGNGRGGGEKLSAEDLDADL+KYHEEAMQIN
Subjt:  RGRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

SwissProt top hitse value%identityAlignment
B5FXN8 THO complex subunit 42.6e-3946.54Show/hide
Query:  MVDPLDTSLDDIIKNNKKS-----GSSNFRGRGGASSGPAPSR-----------RFNNR-------GLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHP
        M D +D SLDDIIK N+       G    RGRGG + G  P R              NR       G NR APYSR K     W HDLF D G       
Subjt:  MVDPLDTSLDDIIKNNKKS-----GSSNFRGRGGASSGPAPSR-----------RFNNR-------GLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHP

Query:  ARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNP
           + +ETG KL VSNLD+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+PM +++V + I T   PA S  
Subjt:  ARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNP

Query:  NFGNSSGFLRGSGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLSAEDLDADLDKYH
           N  G  R  G  LG   GGG  RG   G  GRGRG GR   ++LSAE+LDA LD Y+
Subjt:  NFGNSSGFLRGSGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLSAEDLDADLDKYH

O08583 THO complex subunit 48.4e-3845.04Show/hide
Query:  MVDPLDTSLDDIIKNNKKS----GSSNFRGRGGASSG---------------------PAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPS
        M D +D SLDDIIK N+      G    RGR G+  G                     PA +R     G NR APYSR K     W HDLF D G     
Subjt:  MVDPLDTSLDDIIKNNKKS----GSSNFRGRGGASSG---------------------PAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPS

Query:  HPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASS
             + +ETG KL VSNLD+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+PM +++V + I T   PA S
Subjt:  HPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASS

Query:  NPNFGNSSGFLRGSGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLSAEDLDADLDKYH
             N  G  R  G   G   GGG  RG   G  GRGRG GR   ++LSAE+LDA LD Y+
Subjt:  NPNFGNSSGFLRGSGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLSAEDLDADLDKYH

Q3T0I4 THO complex subunit 41.9e-3746.39Show/hide
Query:  MVDPLDTSLDDIIKNNK--KSGSSNFRGRGGASS------GPAPSRRFN-------NR-----------GLNRAAPYSRAKAPETPWSHDLFVDHGVAYP
        M D +D SLDDIIK N+  + G    RGRG A S      G   + R N       NR           G NR APYSR K     W HDLF D G    
Subjt:  MVDPLDTSLDDIIKNNK--KSGSSNFRGRGGASS------GPAPSRRFN-------NR-----------GLNRAAPYSRAKAPETPWSHDLFVDHGVAYP

Query:  SHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPAS
              + +ETG KL VSNLD+GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA+V F R+ADAL A+K+YN V LDG+PM +++V + I T   PA 
Subjt:  SHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPAS

Query:  SNPNFGNSSGFLRGSGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLSAEDLDADLDKYH
        S    G +    RGSG   G   GGG  RG   G  GRGRG GR   ++LSAE+LDA LD Y+
Subjt:  SNPNFGNSSGFLRGSGRALGRNRGGGRGRGP--GRGGRGRGNGRGGGEKLSAEDLDADLDKYH

Q8L719 THO complex subunit 4B2.4e-6155.24Show/hide
Query:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI
        LD SLDDIIK+N+K           G +N  GRGG+ S   PSRRF NR   R APYSR     +A +  W +D+F        A+  H        S+I
Subjt:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI

Query:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------
        ETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGK MK+EIVG N+  P LP           
Subjt:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------

Query:  ----ASSNPNF-----GNSSGFLRGSGRA--LGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLDKYHEEAMQ
             + N NF     GN +G  RG GR   +GR RGGG G G    GRG RGRG     GRG  E +SAEDLDA+LDKYH+EAM+
Subjt:  ----ASSNPNF-----GNSSGFLRGSGRA--LGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLDKYHEEAMQ

Q8L773 THO complex subunit 4A1.2e-6360.91Show/hide
Query:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFN-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED
        LD SLDD+I  N+KS       RG G+ SGP P+RR N NR   R+APY  AKAPE+ W HD+F D    + S  + A  IETGTKLY+SNLDYGV NED
Subjt:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFN-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED

Query:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGSGRALGRNRGGG
        IKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+EIVG N+ T   P S  P  GNS+G  +  G GR  G+ RGGG
Subjt:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGSGRALGRNRGGG

Query:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        R G G G GGRGR  G+G  EK+SAEDLDADLDKYH   M+ N
Subjt:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

Arabidopsis top hitse value%identityAlignment
AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-6255.24Show/hide
Query:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI
        LD SLDDIIK+N+K           G +N  GRGG+ S   PSRRF NR   R APYSR     +A +  W +D+F        A+  H        S+I
Subjt:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI

Query:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------
        ETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGK MK+EIVG N+  P LP           
Subjt:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------

Query:  ----ASSNPNF-----GNSSGFLRGSGRA--LGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLDKYHEEAMQ
             + N NF     GN +G  RG GR   +GR RGGG G G    GRG RGRG     GRG  E +SAEDLDA+LDKYH+EAM+
Subjt:  ----ASSNPNF-----GNSSGFLRGSGRA--LGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLDKYHEEAMQ

AT5G02530.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.9e-6355.28Show/hide
Query:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI
        LD SLDDIIK+N+K           G +N  GRGG+ S   PSRRF NR   R APYSR     +A +  W +D+F        A+  H        S+I
Subjt:  LDTSLDDIIKNNKK----------SGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSR----AKAPETPWSHDLFVDH---GVAYPSHPAR----ASTI

Query:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------
        ETGTKLY+SNLDYGVSNEDIKELFSEVGDLKRY I+YD+SGRSKGTAEVVFSR+ DALAA+KRYNNVQLDGK MK+EIVG N+  P LP           
Subjt:  ETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLP-----------

Query:  ----ASSNPNF-----GNSSGFLRGSGRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLDKYHEEAMQ
             + N NF     GN +G  RG G  +GR RGGG G G    GRG RGRG     GRG  E +SAEDLDA+LDKYH+EAM+
Subjt:  ----ASSNPNF-----GNSSGFLRGSGRALGRNRGGGRGRG---PGRGGRGRG----NGRGGGEKLSAEDLDADLDKYHEEAMQ

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.3e-6560.91Show/hide
Query:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFN-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED
        LD SLDD+I  N+KS       RG G+ SGP P+RR N NR   R+APY  AKAPE+ W HD+F D    + S  + A  IETGTKLY+SNLDYGV NED
Subjt:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFN-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED

Query:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGSGRALGRNRGGG
        IKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+EIVG N+ T   P S  P  GNS+G  +  G GR  G+ RGGG
Subjt:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGSGRALGRNRGGG

Query:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        R G G G GGRGR  G+G  EK+SAEDLDADLDKYH   M+ N
Subjt:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

AT5G59950.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-6260.08Show/hide
Query:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFN-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED
        LD SLDD+I  N+KS       RG G+ SGP P+RR N NR   R+APY    APE+ W HD+F D    + S  + A  IETGTKLY+SNLDYGV NED
Subjt:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFN-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED

Query:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGSGRALGRNRGGG
        IKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+EIVG N+ T   P S  P  GNS+G  +  G GR  G+ RGGG
Subjt:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGSGRALGRNRGGG

Query:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        R G G G GGRGR  G+G  EK+SAEDLDADLDKYH   M+ N
Subjt:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN

AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein8.3e-6560.49Show/hide
Query:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFN-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED
        LD SLDD+I  N+KS       RG G+ SGP P+RR N NR   R+APY  AKAPE+ W HD+F D    + S  + A  IETGTKLY+SNLDYGV NED
Subjt:  LDTSLDDIIKNNKKSGSSNFRGRG-GASSGPAPSRRFN-NRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNED

Query:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGSGRALGRNRGGG
        IKELF+EVG+LKRY++++D+SGRSKGTAEVV+SR+ DALAA+K+YN+VQLDGKPMK+EIVG N+ T   P S  P  GNS+G  + RG     G+ RGGG
Subjt:  IKELFSEVGDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSG--FLRGSGRALGRNRGGG

Query:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN
        R G G G GGRGR  G+G  EK+SAEDLDADLDKYH   M+ N
Subjt:  R-GRGPGRGGRGRGNGRGGGEKLSAEDLDADLDKYHEEAMQIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGACCCTCTTGACACCAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGATCCTCAAACTTCAGGGGCCGTGGCGGTGCTTCTTCTGGACCAGCTCCCTC
TCGCCGCTTTAACAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTAGAGCCAAGGCGCCTGAGACGCCTTGGTCACACGACTTGTTTGTAGATCATGGTGTGGCGTATC
CTTCACACCCTGCACGGGCCTCTACTATTGAAACTGGCACGAAGCTTTATGTTTCGAATTTGGATTATGGTGTTTCCAACGAGGATATCAAGGAACTTTTTTCTGAAGTT
GGCGATCTTAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAGTAGTTTTTTCGCGACAAGCAGATGCTCTAGCTGCTATAAAGAGATA
CAACAATGTTCAGCTAGATGGGAAGCCCATGAAGTTGGAGATTGTGGGAGCAAACATCGTGACGCCTGTTCTACCTGCTTCTTCAAATCCCAATTTTGGGAATTCAAGTG
GATTTCTTAGAGGCAGTGGACGTGCACTGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGCAATGGCAGAGGTGGTGGTGAA
AAATTATCGGCCGAAGATCTAGATGCTGATTTGGACAAGTACCATGAAGAAGCAATGCAGATCAATTAA
mRNA sequenceShow/hide mRNA sequence
TTTGATTATTAGCGTAGACATCGAATTTTGGCAATTGGCTTCTCTCTCGCGCTTTTCATCATATCACAGCGTTCGATTGAGAAACCCTAGAATTCTCTTTCCCCTCTGTT
TCCCTGAGCCACGACCACCACTCCTCCGCTATCACCATGGTCGACCCTCTTGACACCAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGATCCTCAAACTTCAG
GGGCCGTGGCGGTGCTTCTTCTGGACCAGCTCCCTCTCGCCGCTTTAACAATCGCGGTCTTAATAGAGCAGCGCCCTATTCTAGAGCCAAGGCGCCTGAGACGCCTTGGT
CACACGACTTGTTTGTAGATCATGGTGTGGCGTATCCTTCACACCCTGCACGGGCCTCTACTATTGAAACTGGCACGAAGCTTTATGTTTCGAATTTGGATTATGGTGTT
TCCAACGAGGATATCAAGGAACTTTTTTCTGAAGTTGGCGATCTTAAACGGTATTCTATAAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAGTAGTTTTTTC
GCGACAAGCAGATGCTCTAGCTGCTATAAAGAGATACAACAATGTTCAGCTAGATGGGAAGCCCATGAAGTTGGAGATTGTGGGAGCAAACATCGTGACGCCTGTTCTAC
CTGCTTCTTCAAATCCCAATTTTGGGAATTCAAGTGGATTTCTTAGAGGCAGTGGACGTGCACTGGGCCGAAACCGGGGTGGTGGACGAGGTCGTGGTCCTGGAAGAGGA
GGGCGTGGACGTGGCAATGGCAGAGGTGGTGGTGAAAAATTATCGGCCGAAGATCTAGATGCTGATTTGGACAAGTACCATGAAGAAGCAATGCAGATCAATTAA
Protein sequenceShow/hide protein sequence
MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFNNRGLNRAAPYSRAKAPETPWSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEV
GDLKRYSINYDKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFGNSSGFLRGSGRALGRNRGGGRGRGPGRGGRGRGNGRGGGE
KLSAEDLDADLDKYHEEAMQIN