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Carg12345 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12345
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr01:3054540..3054938
RNA-Seq ExpressionCarg12345
SyntenyCarg12345
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593424.1 hypothetical protein SDJN03_12900, partial [Cucurbita argyrosperma subsp. sororia]4.5e-67100Show/hide
Query:  MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFG
        MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFG
Subjt:  MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFG

Query:  ITFAVFLAMGVYYVLRTRLANANRAMSGKPGA
        ITFAVFLAMGVYYVLRTRLANANRAMSGKPGA
Subjt:  ITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

KAG7019217.1 hypothetical protein SDJN02_18175, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-5181.48Show/hide
Query:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGIL
        M Q LTFLF LSS  FLSI +AEGRAPHGLVYE+PVAFSPMAYDFFHP T++PNA+DPCGASKCSPLPLAAQ+QS PA+E KYSTT QKG    G GGIL
Subjt:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGIL

Query:  GIVFGITFAVFLAMGVYYVLRTRLANANRAMSGKP
        GIVFGITFAVFLAMGVYYVLRTR ANANRAMS +P
Subjt:  GIVFGITFAVFLAMGVYYVLRTRLANANRAMSGKP

XP_022949574.1 uncharacterized protein LOC111452884 [Cucurbita moschata]3.0e-6395.52Show/hide
Query:  MAQTLTFLFYLS--SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV
        M QTLTFLFYLS  SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIV
Subjt:  MAQTLTFLFYLS--SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA
        FGITFAVFLAMGVYYVLRTRLAN NRAMS KPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

XP_022998560.1 uncharacterized protein LOC111493157 [Cucurbita maxima]4.4e-6294.03Show/hide
Query:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV
        MA+TLTFLFYLSS  FLS V AEGRAPHGL YENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIV
Subjt:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA
        FGITFAVFLAMGVYYVLRTRLANANRAMS KPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

XP_023524574.1 uncharacterized protein LOC111788471 [Cucurbita pepo subsp. pepo]1.8e-6396.27Show/hide
Query:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV
        MAQTLTFLFYLSS  FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQS PAQE KYSTTTQKGEGVGGILGIV
Subjt:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA
        FGITFAVFLAMGVYYVLRTRLANANRAMS KPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

TrEMBL top hitse value%identityAlignment
A0A1S3C6E2 uncharacterized protein LOC1034971986.6e-4878.03Show/hide
Query:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGIL
        M + LTFLF LSS  FLS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG SKCSPLPLAAQ+QS PA+E KYSTT Q  +   G GGIL
Subjt:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGIL

Query:  GIVFGITFAVFLAMGVYYVLRTRLANANRAMS
        GIVFGITFAVFLAMGVYYVLRTR ANANRAMS
Subjt:  GIVFGITFAVFLAMGVYYVLRTRLANANRAMS

A0A5A7SXJ1 Uncharacterized protein6.6e-4878.03Show/hide
Query:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGIL
        M + LTFLF LSS  FLS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG SKCSPLPLAAQ+QS PA+E KYSTT Q  +   G GGIL
Subjt:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGIL

Query:  GIVFGITFAVFLAMGVYYVLRTRLANANRAMS
        GIVFGITFAVFLAMGVYYVLRTR ANANRAMS
Subjt:  GIVFGITFAVFLAMGVYYVLRTRLANANRAMS

A0A6J1DWP3 uncharacterized protein LOC1110250994.6e-4976.64Show/hide
Query:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGIL
        M Q LTFLF LSS  FLS+ RAEGRAPHGLVYE+P+AFSPMAYDFFHP  ++ NA+DPC ASKCSPLPLAAQ+QS PAQ+ KYST  QKGE   G GG+L
Subjt:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGIL

Query:  GIVFGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA
        GIV GI FAVFLAMGVYYVLRTR ANANRAMS +PGA
Subjt:  GIVFGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

A0A6J1GD80 uncharacterized protein LOC1114528841.5e-6395.52Show/hide
Query:  MAQTLTFLFYLS--SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV
        M QTLTFLFYLS  SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIV
Subjt:  MAQTLTFLFYLS--SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA
        FGITFAVFLAMGVYYVLRTRLAN NRAMS KPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

A0A6J1KCV5 uncharacterized protein LOC1114931572.1e-6294.03Show/hide
Query:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV
        MA+TLTFLFYLSS  FLS V AEGRAPHGL YENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIV
Subjt:  MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIV

Query:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA
        FGITFAVFLAMGVYYVLRTRLANANRAMS KPGA
Subjt:  FGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28410.1 unknown protein1.1e-1845.22Show/hide
Query:  MAQTLTFLFYLSSFL--SIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAE-DPCGASKCSPLPLAAQLQ--SNPAQEG---KYSTTTQKGEGVG
        M      +F+ SS +  +   A+ RAPHGL YE PVAFSP A+DFFH +  +P+   +PC  S CSPLP+AA++Q  S  AQE      ST T+ G    
Subjt:  MAQTLTFLFYLSSFL--SIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAE-DPCGASKCSPLPLAAQLQ--SNPAQEG---KYSTTTQKGEGVG

Query:  GILGIVFGITFAVFL
        G++GI+FG+ FAV +
Subjt:  GILGIVFGITFAVFL

AT5G60650.1 unknown protein2.1e-1434.06Show/hide
Query:  MAQTLTFLFYLSSFLSIVRAEGRAP-HGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGAS----KCSPLPLAAQLQSNPAQEGKYST-------TTQKG
        +  +L F F   S L  V   G  P HG  Y NP AFSP AYDFFHP++   +  +P  +S      SP P    +    +Q  K S+       + ++ 
Subjt:  MAQTLTFLFYLSSFLSIVRAEGRAP-HGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGAS----KCSPLPLAAQLQSNPAQEGKYST-------TTQKG

Query:  EGVGGILGIVFGITFAVFLAMGVYYVLRTRLANANRAM
        EG G  +G+V G++F  FL++G+Y+V++ + AN  R +
Subjt:  EGVGGILGIVFGITFAVFLAMGVYYVLRTRLANANRAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGCGTTCTC
TCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTA
ATCCTGCACAAGAAGGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGG
GTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGGAAAACCTGGGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGCGTTCTC
TCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTA
ATCCTGCACAAGAAGGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGG
GTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGGAAAACCTGGGGCTTGA
Protein sequenceShow/hide protein sequence
MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMG
VYYVLRTRLANANRAMSGKPGA