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Carg12346 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12346
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionZinc finger, C3HC4 type family protein
Genome locationCarg_Chr01:3056137..3057372
RNA-Seq ExpressionCarg12346
SyntenyCarg12346
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607218.1 hypothetical protein SDJN03_00560, partial [Cucurbita argyrosperma subsp. sororia]5.2e-37100Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
KAG7036903.1 hypothetical protein SDJN02_00523, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-37100Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
XP_004152895.1 uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus]1.2e-3390.36Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MIS+LAQERLLG ALGSVF GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE SHLWNRAVDQTFGPVIQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
XP_022156577.1 uncharacterized protein LOC111023455 [Momordica charantia]5.4e-3490.36Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MISILAQERLLGAALGSVF GVVVFEQRKS+YRSISENYPPA QSPM+K V+AKKYGPE+SHLWNRAVDQTFGP+IQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
XP_022964845.1 uncharacterized protein LOC111464826 [Cucurbita moschata]6.0e-3390.36Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MISILAQERLLGAALGSVF GVVVFEQRKSIY SIS+NYPP TQSPM+K VLAKKYGPE SHLWN AVDQTFGPVIQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
TrEMBL top hitse value%identityAlignment
A0A0A0LXB2 Uncharacterized protein5.8e-3490.36Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MIS+LAQERLLG ALGSVF GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE SHLWNRAVDQTFGPVIQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
A0A1S3C5P6 uncharacterized protein LOC103497197 isoform X23.8e-3387.95Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MIS+LAQERLLG ALGS F GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE SHLWNRAVDQTFGP+IQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
A0A5D3BR76 Uncharacterized protein3.8e-3387.95Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MIS+LAQERLLG ALGS F GVVVFEQRKS+Y+SISENYPPATQSPM+K VLAKKYGPE SHLWNRAVDQTFGP+IQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
A0A6J1DSC3 uncharacterized protein LOC1110234552.6e-3490.36Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MISILAQERLLGAALGSVF GVVVFEQRKS+YRSISENYPPA QSPM+K V+AKKYGPE+SHLWNRAVDQTFGP+IQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
A0A6J1HLZ5 uncharacterized protein LOC1114648262.9e-3390.36Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
        MISILAQERLLGAALGSVF GVVVFEQRKSIY SIS+NYPP TQSPM+K VLAKKYGPE SHLWN AVDQTFGPVIQALSSRG
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28430.1 unknown protein8.3e-1754.22Show/hide
Query:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISE-NYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSR
        MISILAQERLLG  LGS   G +VFEQRK I+ S+S+       Q+ +   +  KKY  E + LWN+AVDQTF P I+ LSSR
Subjt:  MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISE-NYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCCATTCTTGCTCAGGAGCGACTTCTTGGTGCTGCACTGGGCAGCGTATTCGTCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCATATACAGATCCATTTCGGA
AAATTATCCGCCAGCCACCCAATCTCCGATGAAAAAAGCTGTATTAGCAAAGAAATATGGCCCAGAGATTTCGCACCTATGGAATAGAGCTGTAGACCAGACATTTGGAC
CTGTGATTCAGGCTCTCAGTTCACGGGGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCCATTCTTGCTCAGGAGCGACTTCTTGGTGCTGCACTGGGCAGCGTATTCGTCGGGGTTGTTGTTTTTGAGCAGCGGAAAAGCATATACAGATCCATTTCGGA
AAATTATCCGCCAGCCACCCAATCTCCGATGAAAAAAGCTGTATTAGCAAAGAAATATGGCCCAGAGATTTCGCACCTATGGAATAGAGCTGTAGACCAGACATTTGGAC
CTGTGATTCAGGCTCTCAGTTCACGGGGA
Protein sequenceShow/hide protein sequence
MISILAQERLLGAALGSVFVGVVVFEQRKSIYRSISENYPPATQSPMKKAVLAKKYGPEISHLWNRAVDQTFGPVIQALSSRG