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Carg12350 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12350
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCCT domain-containing protein
Genome locationCarg_Chr01:3081297..3081994
RNA-Seq ExpressionCarg12350
SyntenyCarg12350
Gene Ontology termsGO:0009909 - regulation of flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR010402 - CCT domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607222.1 Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. sororia]1.2e-10699.5Show/hide
Query:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
        MHSHSAATADASLSHLQPPPPFPSFSNLI+SHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
Subjt:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS

Query:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
        LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
Subjt:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF

Query:  VP
        VP
Subjt:  VP

KAG7036907.1 Zinc finger protein CONSTANS-LIKE 4, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-107100Show/hide
Query:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
        MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
Subjt:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS

Query:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
        LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
Subjt:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF

Query:  VP
        VP
Subjt:  VP

XP_022949263.1 zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata]3.9e-10297.03Show/hide
Query:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
        MHSH+AATADASLSHLQPPPPFPSFSN I+SHNP PMVEALEVSYSGSSSGGC  SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
Subjt:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS

Query:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
        LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
Subjt:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF

Query:  VP
        VP
Subjt:  VP

XP_022998187.1 zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima]6.6e-10296.53Show/hide
Query:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
        MHSHSAATADASLSHLQPPPPFPSFSNLI+SHNPFP+VEALEVSYSGSSSGGC  SSYGSPTSHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESS
Subjt:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS

Query:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
        LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDNAMAEDDASWTTFLDSYSLNF
Subjt:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF

Query:  VP
        VP
Subjt:  VP

XP_023524572.1 uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo]1.3e-8196.39Show/hide
Query:  MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKK
        MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSH PTSRRPLTRAYSSGHNER GEER WSSESS+IIEGMRRASPYTPQEKRHRIERYK KRNQRNFNKK
Subjt:  MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKK

Query:  IKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP
        IKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM EDDASWTTFLDSYSLNFVP
Subjt:  IKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

TrEMBL top hitse value%identityAlignment
A0A0A0LUR6 CCT domain-containing protein4.0e-4454.22Show/hide
Query:  MHSHSAATADASLSHLQ------PPPPFPSFSNLIHSHNPF-----------PMVEALE------VSYSGSSSGGCSYSSYGSPT-SHPGL---------
        MHS S A  D S+ HL        PP FPSF N   SH+             P++E+ E      +SYSG SSG C  SSYGSPT S P L         
Subjt:  MHSHSAATADASLSHLQ------PPPPFPSFSNLIHSHNPF-----------PMVEALE------VSYSGSSSGGCSYSSYGSPT-SHPGL---------

Query:  ------SHGP---------TSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRI
               HGP         T    + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EKR RIERYKTKRNQRNFNKKIKYECRKTLADSR+RI
Subjt:  ------SHGP---------TSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRI

Query:  RGRFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDASWTTFLDSY
        RGRFARNEE EN NSTSSP+E WSCY+N M E     DD SW TFLDSY
Subjt:  RGRFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDASWTTFLDSY

A0A6J1GBJ0 zinc finger protein CONSTANS-LIKE 4-like1.9e-10297.03Show/hide
Query:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
        MHSH+AATADASLSHLQPPPPFPSFSN I+SHNP PMVEALEVSYSGSSSGGC  SSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
Subjt:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS

Query:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
        LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
Subjt:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF

Query:  VP
        VP
Subjt:  VP

A0A6J1HLZ0 zinc finger protein CONSTANS-LIKE 5-like1.2e-4557.26Show/hide
Query:  MHSHSAATADASLSHL------QPPPPFPSFSNLIHSHNP----------FPMVEA-----LEVSYSGSSSGGCSYSSYGSPTSHP--GLSHGPTSR---
        MH+ S+AT +ASL HL        PP   SF + I SH+            PM+E+      E+SYS  SSG C  SSYGSPTS P   + H P  +   
Subjt:  MHSHSAATADASLSHL------QPPPPFPSFSNLIHSHNP----------FPMVEA-----LEVSYSGSSSGGCSYSSYGSPTSHP--GLSHGPTSR---

Query:  -----RPLTRAYSSGHNERGGEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNST
               + RAYS  ++ +G  E A SSESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADSR+RIRGRFARNEE ENSNST
Subjt:  -----RPLTRAYSSGHNERGGEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNST

Query:  SSPVETWSCYDNAMAE----DDASWTTFLDSYSL
        SSP ETWSCYDNA AE    DD SW TFLDSYS+
Subjt:  SSPVETWSCYDNAMAE----DDASWTTFLDSYSL

A0A6J1I3X3 zinc finger protein CONSTANS-LIKE 5-like isoform X11.7e-4757.69Show/hide
Query:  MHSHSAATADASLSHLQ------PPPPFPSFSNLIHSHNPF------PMVE-----ALEVSYSGSSSGGCSYSSYGSPTSHP--GLSHGP--------TS
        MH+ S+AT +ASL HL        PP   SF + I SH+        PM+E       E+SYS  SSG C  SSY SPTS P   +SHGP          
Subjt:  MHSHSAATADASLSHLQ------PPPPFPSFSNLIHSHNPF------PMVE-----ALEVSYSGSSSGGCSYSSYGSPTSHP--GLSHGP--------TS

Query:  RRPLTRAYSSGHNERGGEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPV
           + RAY S ++ +G  E   S+ESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADSR+RIRGRFARNEE ENSNSTSSP 
Subjt:  RRPLTRAYSSGHNERGGEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPV

Query:  ETWSCYDNAMAE----DDASWTTFLDSYSLNFVP
        ETWSCYDNA  E    DD SW TFLDSYS+NF+P
Subjt:  ETWSCYDNAMAE----DDASWTTFLDSYSLNFVP

A0A6J1K781 zinc finger protein CONSTANS-LIKE 4-like3.2e-10296.53Show/hide
Query:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS
        MHSHSAATADASLSHLQPPPPFPSFSNLI+SHNPFP+VEALEVSYSGSSSGGC  SSYGSPTSHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESS
Subjt:  MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESS

Query:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF
        LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDNAMAEDDASWTTFLDSYSLNF
Subjt:  LIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNF

Query:  VP
        VP
Subjt:  VP

SwissProt top hitse value%identityAlignment
Q940T9 Zinc finger protein CONSTANS-LIKE 42.7e-0545.16Show/hide
Query:  GMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSN
        G +RA P T  E+  R+ RY+ KR  R F K I+Y  RK  A+ R RI+GRFA+  +   SN
Subjt:  GMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSN

Arabidopsis top hitse value%identityAlignment
AT2G33350.1 CCT motif family protein3.0e-1246.91Show/hide
Query:  MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDD
        + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    N      + +S + +   EDD
Subjt:  MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDD

AT2G33350.2 CCT motif family protein3.0e-1246.91Show/hide
Query:  MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDD
        + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    N      + +S + +   EDD
Subjt:  MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDD

AT3G12890.1 activator of spomin::LUC24.0e-1252.78Show/hide
Query:  GEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEE
        GE+   +SE  +  E   +   Y+ +E++ RI RY  K+NQRNFNK IKY CRKTLAD R R+RGRFARN +
Subjt:  GEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEE

AT5G41380.1 CCT motif family protein4.7e-1335.4Show/hide
Query:  PMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLII--EGMRRASPYTPQEKRHRIERYKTKRNQRNF
        PM+++  +SY+  SS   ++ S                   + R YS+G  +   E +  S  S++    E   +   Y+ +E++ +I +Y+ KRNQRNF
Subjt:  PMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLII--EGMRRASPYTPQEKRHRIERYKTKRNQRNF

Query:  NKKIKYECRKTLADSRKRIRGRFARNEE-AENSNSTSSPVETWSCYDNAMAEDDASWTTFL
         K IKY CRKTLADSR RIRGRFARN+E  E  N      E W   D    +++AS ++F+
Subjt:  NKKIKYECRKTLADSRKRIRGRFARNEE-AENSNSTSSPVETWSCYDNAMAEDDASWTTFL

AT5G59990.1 CCT motif family protein1.9e-2239.72Show/hide
Query:  HLQPPPPFPSFSNLIHSHNPFPMVEALE------------------VSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRR--------PLTRAYSSG---H
        H  PPPP    + L+ S N     EA+                    S S   SGG S     S +SH G S   T+          P+ RA S+G    
Subjt:  HLQPPPPFPSFSNLIHSHNPFPMVEALE------------------VSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRR--------PLTRAYSSG---H

Query:  NERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAED
        + R      W SES+ IIEGM +A  Y+P+EK+ +IE+Y++KRN RNFNK+IKYECRKTLADSR RIRGRFARN+E                   A+  D
Subjt:  NERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAED

Query:  DASWTTFLDSYSLN
          +W +FLDS+S N
Subjt:  DASWTTFLDSYSLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATACATTCCCACAACCCTTTCCCAAT
GGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTC
GCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCC
CCATATACTCCCCAAGAGAAGAGACACAGAATTGAGAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGA
TAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCGGTCGAGACATGGAGCTGCTACGACAATGCCATGGCCG
AGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATACATTCCCACAACCCTTTCCCAAT
GGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTC
GCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCC
CCATATACTCCCCAAGAGAAGAGACACAGAATTGAGAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGA
TAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCGGTCGAGACATGGAGCTGCTACGACAATGCCATGGCCG
AGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA
Protein sequenceShow/hide protein sequence
MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRAS
PYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP