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Carg12371 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12371
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCarg_Chr01:3241170..3243436
RNA-Seq ExpressionCarg12371
SyntenyCarg12371
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607243.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia]6.1e-7497.16Show/hide
Query:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE
        MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFL+ILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM
        DAQKCRKMNNCGHIFH RCIDRWLKVDR CPLCRSCVCVV+
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM

KAG6607244.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia]8.8e-7398.51Show/hide
Query:  MVNTSDLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG
        MVNTS LTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG
Subjt:  MVNTSDLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCG

Query:  HIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF
        HIFHCRCIDRWLKVE HCPLCRSCVCAVVHPSSF
Subjt:  HIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSF

KAG7036928.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]8.3e-164100Show/hide
Query:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE
        MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVMVNTSDLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIV
        DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVMVNTSDLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIV
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVMVNTSDLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIV

Query:  RIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSFRRR
        RIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSFRRR
Subjt:  RIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSFRRR

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]5.2e-7395.04Show/hide
Query:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE
        MPLPPSFAASPPPI+AIV+TYGLRWTNNNLALIAICFL+ILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSY+EADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM
        D QKCRKMN CGHIFHRRCIDRWLKVDRHCPLCRSCVCVV+
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]6.8e-7395.04Show/hide
Query:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE
        MP PPSFAASPPPI+AIVETYGLRWTNNNLA+IAICFL+ILYLILLNFFKSELESGS+PAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM
        DAQKCRKMN CGHIFHRRCIDRWLKVDRHCPLCRSCVCVV+
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM

TrEMBL top hitse value%identityAlignment
A0A0A0LXE1 RING-type domain-containing protein1.8e-2649.35Show/hide
Query:  MPLPPSFAASPPP---ITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF------KSELESGSEPAGALPVVREPEIVRIEASVFS-YKEADGGHDD
        M  PP  AASP P     AI + + L        L AICF +I+Y +   F+      +SE ++G+     LPV RE EIV+IE  VFS Y+EA G  +D
Subjt:  MPLPPSFAASPPP---ITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF------KSELESGSEPAGALPVVREPEIVRIEASVFS-YKEADGGHDD

Query:  ---ECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM
           EC ICL++FED QKC+ M  CGHIFH  CIDRWL+ +R CPLCRSCVCVV+
Subjt:  ---ECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM

A0A1S3C6H7 RING-H2 finger protein ATL66-like1.9e-2545.96Show/hide
Query:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRIEASVFSYKEA---
        M  P   AASP P+  I   +     ++   + AICF +I+Y I    +     ++ +S     G    LP  RE       EIV+IEA VFSY+EA   
Subjt:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRIEASVFSYKEA---

Query:  ----DGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM
            D   D EC ICL++FEDAQKCR M  CGHIFHR CIDRWLK +R CPLCR+CVCVV+
Subjt:  ----DGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM

A0A5D3BGV5 RING-H2 finger protein ATL66-like1.9e-2545.96Show/hide
Query:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRIEASVFSYKEA---
        M  P   AASP P+  I   +     ++   + AICF +I+Y I    +     ++ +S     G    LP  RE       EIV+IEA VFSY+EA   
Subjt:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRIEASVFSYKEA---

Query:  ----DGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM
            D   D EC ICL++FEDAQKCR M  CGHIFHR CIDRWLK +R CPLCR+CVCVV+
Subjt:  ----DGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM

A0A6J1DN25 RING-H2 finger protein ATL1-like5.1e-2650.34Show/hide
Query:  PPSFAASPPPIT---AIVETY---GLRWTNNNLALIAICFLLILYLILLNFFKSEL---ESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAI
        PPS+ AS P +T   AI   Y   GL   +   A+ AIC + ILY I  + +KS L   E      GA P VRE E+VRIEAS F+    D G  +EC I
Subjt:  PPSFAASPPPIT---AIVETY---GLRWTNNNLALIAICFLLILYLILLNFFKSEL---ESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAI

Query:  CLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM
        CL EF+  +KC  M+ C H+FHR CIDRWLK +RHCPLCRSCVCV +
Subjt:  CLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM

A0A6J1KAT3 RING-type E3 ubiquitin transferase2.5e-7395.04Show/hide
Query:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE
        MPLPPSFAASPPPI+AIV+TYGLRWTNNNLALIAICFL+ILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSY+EADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFE

Query:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM
        D QKCRKMN CGHIFHRRCIDRWLKVDRHCPLCRSCVCVV+
Subjt:  DAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCVCVVM

SwissProt top hitse value%identityAlignment
Q7XLY8 E3 ubiquitin-protein ligase Os04g05909001.7e-1045.9Show/hide
Query:  YREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAV
        YR  DG  H  +C++CL  F DG+  R++ +C H FH +CID WLK   +CPLCR+ +  V
Subjt:  YREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAV

Q9LF64 RING-H2 finger protein ATL525.3e-1242.86Show/hide
Query:  SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSS
        +V+ Y+  DG   G++C++CL  FE+ +  R++ KC H FH  CID WLK   +CPLCR+ V  V +P++
Subjt:  SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSS

Q9M0C3 RING-H2 finger protein ATL141.7e-1040.3Show/hide
Query:  IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV
        + R+    +C   ++ G G +C +C+DGF  GQ CR + +CGH+FH +C+D WL     CP+CR  V
Subjt:  IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV

Q9SRM0 RING-H2 finger protein ATL661.6e-1349.25Show/hide
Query:  PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCR
        P  +R    V C RE A+     EC ICL GFE+G+K +++  C H +HC C+DRWLK E  CPLCR
Subjt:  PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCR

Q9ZV51 RING-H2 finger protein ATL561.3e-1033.04Show/hide
Query:  LALIAICFLLILYLILLNFF-------KSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDR
        L LI I  +LIL L+L +         ++  +  S+   +  V + P+    E S ++  E+D      C +C D F   Q CR +  CGH+FHR+C+D 
Subjt:  LALIAICFLLILYLILLNFF-------KSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDR

Query:  WLKVDRHCPLCRSCV
        WL     CP+CR+ V
Subjt:  WLKVDRHCPLCRSCV

Arabidopsis top hitse value%identityAlignment
AT1G51930.1 RING/U-box superfamily protein1.4e-1236.36Show/hide
Query:  KSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV
        + ++E+G   A     ++E E           +E +GG    C ICL+E+ED  + R++ NCGH+FH  CID WL   ++CP CR  V
Subjt:  KSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDRWLKVDRHCPLCRSCV

AT2G18670.1 RING/U-box superfamily protein9.3e-1233.04Show/hide
Query:  LALIAICFLLILYLILLNFF-------KSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDR
        L LI I  +LIL L+L +         ++  +  S+   +  V + P+    E S ++  E+D      C +C D F   Q CR +  CGH+FHR+C+D 
Subjt:  LALIAICFLLILYLILLNFF-------KSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNNCGHIFHRRCIDR

Query:  WLKVDRHCPLCRSCV
        WL     CP+CR+ V
Subjt:  WLKVDRHCPLCRSCV

AT3G11110.1 RING/U-box superfamily protein1.2e-1449.25Show/hide
Query:  PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCR
        P  +R    V C RE A+     EC ICL GFE+G+K +++  C H +HC C+DRWLK E  CPLCR
Subjt:  PVIVRIEASVFCYRE-ADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCR

AT4G30370.1 RING/U-box superfamily protein1.2e-1140.3Show/hide
Query:  IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV
        + R+    +C   ++ G G +C +C+DGF  GQ CR + +CGH+FH +C+D WL     CP+CR  V
Subjt:  IVRIEASVFCYREADGGHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCV

AT5G17600.1 RING/U-box superfamily protein3.8e-1342.86Show/hide
Query:  SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSS
        +V+ Y+  DG   G++C++CL  FE+ +  R++ KC H FH  CID WLK   +CPLCR+ V  V +P++
Subjt:  SVFCYREADG-GHGAECAICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTACCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTT
CCTCCTTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGA
TTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAAC
TGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCATGGTCAACACTTCCGATCT
GACATGGGGGGATGAGTATTTAGCTCTGATAGCCGTTTGTACCGTCATTATACTCTACCTCATCGTCTTAAATTGCATCAAATCCAGATACTTCAACGAATCAGATTCCG
GCTATGAGGCAGTCGGAGCATTGCCGGAAGTGCGAGCGCCGGTGATTGTACGGATTGAGGCCTCGGTTTTCTGTTACAGGGAAGCCGACGGAGGTCACGGCGCCGAATGC
GCGATTTGCCTGGACGGATTTGAAGATGGGCAAAAGTGTCGAATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCATTGACCGGTGGCTCAAGGTGGAGTGCCA
TTGTCCCCTTTGCCGCAGCTGCGTTTGTGCCGTCGTTCATCCATCTTCTTTTCGAAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTGCCGCCGTCTTTTGCCGCTTCACCGCCGCCAATTACCGCCATCGTGGAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATTTGTTT
CCTCCTTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTAGTGCGAGAGCCGGAGATTGTACGGA
TTGAGGCCTCGGTTTTCAGTTACAAGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGCCCAAAAGTGCCGGAAGATGAATAAC
TGTGGCCATATATTCCACCGCCGCTGCATTGACCGGTGGCTCAAGGTGGACCGCCACTGCCCCCTTTGCCGCAGCTGCGTTTGCGTAGTCATGGTCAACACTTCCGATCT
GACATGGGGGGATGAGTATTTAGCTCTGATAGCCGTTTGTACCGTCATTATACTCTACCTCATCGTCTTAAATTGCATCAAATCCAGATACTTCAACGAATCAGATTCCG
GCTATGAGGCAGTCGGAGCATTGCCGGAAGTGCGAGCGCCGGTGATTGTACGGATTGAGGCCTCGGTTTTCTGTTACAGGGAAGCCGACGGAGGTCACGGCGCCGAATGC
GCGATTTGCCTGGACGGATTTGAAGATGGGCAAAAGTGTCGAATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCATTGACCGGTGGCTCAAGGTGGAGTGCCA
TTGTCCCCTTTGCCGCAGCTGCGTTTGTGCCGTCGTTCATCCATCTTCTTTTCGAAGAAGATGA
Protein sequenceShow/hide protein sequence
MPLPPSFAASPPPITAIVETYGLRWTNNNLALIAICFLLILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYKEADGGHDDECAICLDEFEDAQKCRKMNN
CGHIFHRRCIDRWLKVDRHCPLCRSCVCVVMVNTSDLTWGDEYLALIAVCTVIILYLIVLNCIKSRYFNESDSGYEAVGALPEVRAPVIVRIEASVFCYREADGGHGAEC
AICLDGFEDGQKCRMMNKCGHIFHCRCIDRWLKVECHCPLCRSCVCAVVHPSSFRRR