CuGenDBv2

Gene ID	Carg12378
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Rab5-interacting
Genome location	Carg_Chr01:3272897..3275167
RNA-Seq Expression	Carg12378
Synteny	Carg12378
Gene Ontology terms	GO:0006996 - organelle organization (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR010742 - Rab5-interacting protein IPR029008 - Rab5-interacting protein family

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004145291.1 uncharacterized protein RAB5IF homolog [Cucumis sativus]

3.2e-62

93.7

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGKS+KVNSQLQ QNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWGS+PLVGG+WFILFLVISTTM+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

XP_008457469.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]

3.4e-64

93.7

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGK++KVNSQLQHQNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWGS+PLVGGIWFILFLVISTTM+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFAS+TLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

XP_022948613.1 uncharacterized protein C20orf24 homolog [Cucurbita moschata]

1.6e-66

100

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTLVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

XP_022998338.1 uncharacterized protein C20orf24 homolog [Cucurbita maxima]

3.7e-66

99.21

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFI+FLVISTTMVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTLVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

XP_038895585.1 respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida]

1.5e-64

96.06

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGKS KVNSQLQHQNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWGS+PLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY22 Uncharacterized protein

1.6e-62

93.7

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGKS+KVNSQLQ QNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWGS+PLVGG+WFILFLVISTTM+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

A0A1S3C692 uncharacterized protein C20orf24 homolog

1.7e-64

93.7

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGK++KVNSQLQHQNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWGS+PLVGGIWFILFLVISTTM+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFAS+TLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

A0A5A7VQ84 Rab5-interacting

1.5e-57

88.19

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGK++KVNSQLQHQNGHLPPFKLA LFDPE SWDKDQLGDVLHWMRQSVALVCGLLWGS+PLVGGIWFILFLVISTTM+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFAS+TLFLL   L   L  F
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

A0A6J1G9S8 uncharacterized protein C20orf24 homolog

8.0e-67

100

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTLVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

A0A6J1KGG2 uncharacterized protein C20orf24 homolog

1.8e-66

99.21

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG
        MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFI+FLVISTTMVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTLVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

SwissProt top hits

e value

%identity

Alignment

Q9BUV8 Respirasome Complex Assembly Factor 1

1.2e-14

34.65

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASW-DKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGH
        M  G+  +   Q Q  NG L     + +   +A+W DKD+  DV++W RQ +A+V G++WG +PL G +    F +I+  ++Y Y++  L++DEEE+GG 
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASW-DKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGH

Query:  GVLLQEGLFASITLFLLMWTLVYSLGH
          L +EG   S  LF++     ++ GH
Subjt:  GVLLQEGLFASITLFLLMWTLVYSLGH

Q9CQT9 Respirasome Complex Assembly Factor 1

4.3e-17

35.94

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Query:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASW-DKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGH
        M  G+  +   Q Q  NG L     + +   +A+W DKD+  DV++W RQ +ALV G++WG +PL G +    F +I+  ++Y Y++  L++DEEE+GG 
Subjt:  MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASW-DKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGH

Query:  GVLLQEGLFASITLFLLMWTLVYSLGHF
          L +EG   S  LF+++W + Y+  H+
Subjt:  GVLLQEGLFASITLFLLMWTLVYSLGHF

Arabidopsis top hits

e value

%identity

Alignment

AT2G29020.1 Rab5-interacting family protein

4.8e-48

66.92

Show/hide

Query:  MKDGKSIKVNS------QLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEE
        MK+GKS K +S      Q+ HQN HL  F  A LFD EASWDKDQLGDVLHW+RQ V L+CGLLWG++PLVGGIW +LFL IS+ +VYGYYA++LK+DEE
Subjt:  MKDGKSIKVNS------QLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEE

Query:  EFGGHGVLLQEGLFASITLFLLMWTLVYSLGHF
        +FGGH  LLQ+GLFAS++LFLL W LVYSL  F
Subjt:  EFGGHGVLLQEGLFASITLFLLMWTLVYSLGHF

AT5G59410.1 Rab5-interacting family protein

1.2e-51

74.62

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Query:  MKDGKSIKVN---SQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFG
        MK+ KS K+N    Q  HQN HL P KLA LFDP+ASWDKDQLGDVLHW+RQ V L+ GLLWGS+PLVGGIW ILFL IS+ +VYGYYAMILKVDEE+FG
Subjt:  MKDGKSIKVN---SQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFG

Query:  GHGVLLQEGLFASITLFLLMWTLVYSLGHF
        GH  LLQEGLFAS+TLFLL W LVYSL HF
Subjt:  GHGVLLQEGLFASITLFLLMWTLVYSLGHF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGGACGGGAAGTCGATTAAGGTTAATTCTCAGTTGCAGCATCAGAATGGTCACTTGCCGCCGTTCAAATTGGCGAATTTGTTCGATCCAGAGGCTTCTTGGGATAA
GGATCAACTGGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTACCTCTGGTTGGAGGGATTTGGTTCATCTTATTCT
TGGTGATATCAACCACAATGGTATATGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGAGTCCTCCTCCAGGAAGGGCTTTTTGCTTCC
ATAACTCTGTTTCTGCTTATGTGGACTCTCGTTTACAGCTTGGGACACTTCTGA

mRNA sequence

Show/hide mRNA sequence

ACACCCGGTCGGATCCGGATGAACGGTGCATGGAATCTGTGGAATAAACAAAGGCTGCCATGGACAGCAAGCAAAAGTTCTTCACGTTTCCATAAAATTACAATTTTCCC
ATTCCAGATTGAATCGATTTCAGATTTTTATTAAAATAAAATCGGAAGAGATCTACAGAAAGCCGTCTCGTTAATTTGTTTATTCCATTCCCCCACTCTCTCATGCTGTT
CTTGTTTTTCCAAAACCCTAGCATCTTCTGATCCTTATCTCTAGATTTCAGTTCATACTCCACTGGTTTTCTCGAATTTTCTCTCGATTTCTCGATTTCCGAATAGTCGG
GATGAAGGACGGGAAGTCGATTAAGGTTAATTCTCAGTTGCAGCATCAGAATGGTCACTTGCCGCCGTTCAAATTGGCGAATTTGTTCGATCCAGAGGCTTCTTGGGATA
AGGATCAACTGGGAGATGTCTTGCATTGGATGCGACAGTCGGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTACCTCTGGTTGGAGGGATTTGGTTCATCTTATTC
TTGGTGATATCAACCACAATGGTATATGGATACTATGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGGGGTCATGGAGTCCTCCTCCAGGAAGGGCTTTTTGCTTC
CATAACTCTGTTTCTGCTTATGTGGACTCTCGTTTACAGCTTGGGACACTTCTGACAATGGTTTTGTCATCGTTCTCAATATCGAGCCAAGCAATGGTAGGGATGTTATC
GCCACTGTTGCTTGCTTTTTTTTATTAGTGATTGTGCAATAGTTTGCCTTAGAAGGAAGTGTCCACGATGTAGAATTGGATTAATTTCATTAAAATTACAACTTACAAAA
TTTTAGTAGTTATTATTGATTCTGTTAAACCCAATTCAATCTTCTTCAAAGAAT

Protein sequence

Show/hide protein sequence

MKDGKSIKVNSQLQHQNGHLPPFKLANLFDPEASWDKDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLVISTTMVYGYYAMILKVDEEEFGGHGVLLQEGLFAS
ITLFLLMWTLVYSLGHF

Carg12378 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome