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Carg12406 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12406
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmitochondrial import inner membrane translocase subunit TIM10
Genome locationCarg_Chr01:3404702..3407451
RNA-Seq ExpressionCarg12406
SyntenyCarg12406
Gene Ontology termsGO:0045039 - protein insertion into mitochondrial inner membrane (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR004217 - Tim10-like
IPR035427 - Tim10-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583395.1 Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbita argyrosperma subsp. sororia]7.5e-4082.83Show/hide
Query:  QSSNFALVTHSKVSMASPTG-PTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        +++N   + HSK+SMASP    +A+DKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNL+GQLLGSGRPPM
Subjt:  QSSNFALVTHSKVSMASPTG-PTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

KAG6607285.1 Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbita argyrosperma subsp. sororia]4.8e-6398.33Show/hide
Query:  AGFLPPPLVTDWIRRTRFKTELQSSNFALVTHSKVSMASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVS
        +G LPPPLVTDWIRRTRFKTELQSSNFALVTHSKVSMASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVS
Subjt:  AGFLPPPLVTDWIRRTRFKTELQSSNFALVTHSKVSMASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVS

Query:  KYWHVTNLIGQLLGSGRPPM
        KYWHVTNLIGQLLGSGRPPM
Subjt:  KYWHVTNLIGQLLGSGRPPM

KAG7036963.1 Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-66100Show/hide
Query:  MDLAAGFLPPPLVTDWIRRTRFKTELQSSNFALVTHSKVSMASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCID
        MDLAAGFLPPPLVTDWIRRTRFKTELQSSNFALVTHSKVSMASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCID
Subjt:  MDLAAGFLPPPLVTDWIRRTRFKTELQSSNFALVTHSKVSMASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCID

Query:  RCVSKYWHVTNLIGQLLGSGRPPM
        RCVSKYWHVTNLIGQLLGSGRPPM
Subjt:  RCVSKYWHVTNLIGQLLGSGRPPM

XP_022949393.1 mitochondrial import inner membrane translocase subunit TIM10 [Cucurbita moschata]2.8e-42100Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

XP_038894964.1 mitochondrial import inner membrane translocase subunit TIM10 [Benincasa hispida]3.7e-3995.29Show/hide
Query:  MASPTG-PTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASP   P+AVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
Subjt:  MASPTG-PTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

TrEMBL top hitse value%identityAlignment
A0A0A0LVG1 zf-Tim10_DDP domain-containing protein1.5e-3894.12Show/hide
Query:  MASPTG-PTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASP   P+AVDKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
Subjt:  MASPTG-PTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

A0A540M5I7 zf-Tim10_DDP domain-containing protein1.2e-3889.29Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MA+P  PT +DKEQIFGMAEKEMEYRVELFNKLTH+CFNKCV+K+YKESELNMGENSCIDRCVSKYWHVTNL+GQLLGSGRPPM
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

A0A5D3BDG9 Mitochondrial import inner membrane translocase subunit TIM10-like1.5e-3894.12Show/hide
Query:  MASPTG-PTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASP   P+AVDKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
Subjt:  MASPTG-PTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

A0A6J1GBZ5 mitochondrial import inner membrane translocase subunit TIM101.3e-42100Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

A0A6J1KDY1 mitochondrial import inner membrane translocase subunit TIM10-like1.3e-42100Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

SwissProt top hitse value%identityAlignment
P87108 Mitochondrial import inner membrane translocase subunit TIM104.5e-1138.57Show/hide
Query:  GPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQ
        G   +  +Q    AE E++   ++FNKL ++C+ KC++  Y E ELN  E+SC+DRCV+KY+     +G+
Subjt:  GPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQ

Q4WJX5 Mitochondrial import inner membrane translocase subunit tim101.7e-1043.75Show/hide
Query:  GPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHV
        GP  +   +    AE E+E   ++FN+LT SC  KC+   Y+E +LN GE+ C+DRCVSK++ V
Subjt:  GPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHV

Q759W7 Mitochondrial import inner membrane translocase subunit TIM101.3e-1037.14Show/hide
Query:  GPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQ
        G   +  +Q    AE E++   ++FNKL  +C  KC+D  Y E +LN  E++C+DRCV+KY+     +G+
Subjt:  GPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQ

Q9W2D6 Mitochondrial import inner membrane translocase subunit Tim102.6e-1145.45Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLL
        MA P   TA D+ ++  M E E+E   +L+N++T++C  KC+  RY ESEL  GE  CIDRCV+KY  +   IG+ L
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLL

Q9ZW33 Mitochondrial import inner membrane translocase subunit TIM101.3e-3173.81Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASP  P  V KEQ F MA+ EMEYRVELFNKL  +CFNKCVDKRYKE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

Arabidopsis top hitse value%identityAlignment
AT2G29530.1 Tim10/DDP family zinc finger protein9.5e-3373.81Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASP  P  V KEQ F MA+ EMEYRVELFNKL  +CFNKCVDKRYKE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

AT2G29530.2 Tim10/DDP family zinc finger protein9.5e-3373.81Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM
        MASP  P  V KEQ F MA+ EMEYRVELFNKL  +CFNKCVDKRYKE+ELNMGENSCIDRCVSKYW V  ++GQLL +G+PP+
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQLLGSGRPPM

AT2G29530.3 Tim10/DDP family zinc finger protein4.1e-2856.48Show/hide
Query:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNK------------------------LTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQL
        MASP  P  V KEQ F MA+ EMEYRVELFN                         L  +CFNKCVDKRYKE+ELNMGENSCIDRCVSKYW V  ++GQL
Subjt:  MASPTGPTAVDKEQIFGMAEKEMEYRVELFNK------------------------LTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLIGQL

Query:  LGSGRPPM
        L +G+PP+
Subjt:  LGSGRPPM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTGCAGCGGGGTTTTTGCCTCCTCCATTAGTTACTGATTGGATTCGTCGAACCCGTTTCAAGACAGAGCTACAATCTTCAAATTTTGCATTAGTAACTCATTC
GAAAGTCTCAATGGCTTCTCCGACTGGTCCAACGGCTGTGGACAAGGAACAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAACTGTTCAACAAGCTTA
CACACTCGTGTTTTAACAAATGTGTCGATAAGAGGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGCTGCATTGATCGCTGTGTTTCCAAGTATTGGCATGTAACC
AATTTAATCGGCCAGCTACTTGGCTCTGGTAGACCTCCCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTTGCAGCGGGGTTTTTGCCTCCTCCATTAGTTACTGATTGGATTCGTCGAACCCGTTTCAAGACAGAGCTACAATCTTCAAATTTTGCATTAGTAACTCATTC
GAAAGTCTCAATGGCTTCTCCGACTGGTCCAACGGCTGTGGACAAGGAACAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAACTGTTCAACAAGCTTA
CACACTCGTGTTTTAACAAATGTGTCGATAAGAGGTACAAGGAATCTGAGCTGAATATGGGTGAAAATAGCTGCATTGATCGCTGTGTTTCCAAGTATTGGCATGTAACC
AATTTAATCGGCCAGCTACTTGGCTCTGGTAGACCTCCCATGTGACTTGCTTCCTGATCTGAGTGATTGTTTGGTGAGTTTGGAAGAACTTTGATCTATGCATTTTAGGT
CTAATTAGTTCTCCATCTCACGAAATAACCTGTTTTTCTGTTCAATAAAGCAGTGAAAATGGCGGATTCTAGGCAATTTTATAGTTTTCATTTCACCATTCACTATTATA
CCCTTATATTTTCGTTGCTCAAGATCATAGCGGCTATAATTTGCCACTTCAATATCTTTCTTGCCAATTCTTTAGCTTTAGATTCTGAAAAGGATGGTTAAGTGAAGTTT
AATTGTACTTTCCCACCTAAATATTTTGGTGTTTAGATTAACATTGATGCTCTCTACCATATTCAAGCAATCAAACAATGTCGAAAATTTTAGTCGCAGAATATGAGAAA
TTTTAATTAAAGCTGTTTTTCAAAGGAGACTGAAGGACTGATTTTAGATAAATCAATGAATTAATCAGCTTTACAGCAAGAAAAATGGTTAAAATCCTCTCATAATTGCT
TTT
Protein sequenceShow/hide protein sequence
MDLAAGFLPPPLVTDWIRRTRFKTELQSSNFALVTHSKVSMASPTGPTAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVT
NLIGQLLGSGRPPM