; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg12412 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12412
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSerine/arginine-rich splicing factor SR45a-like
Genome locationCarg_Chr01:3439541..3441883
RNA-Seq ExpressionCarg12412
SyntenyCarg12412
Gene Ontology termsGO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031790.1 serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]5.5e-7861.09Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEKHFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEAE CI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------------GADPILPIDAEDQMT
        KYLNRSVLEGR+ITVEK                ARRRRGRTPTPGRY GLRTV                                G DP+   D  D M 
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------------GADPILPIDAEDQMT

Query:  RHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV
           T +DHT LIA EDMILHTIG    IL  T+ ++        G ILDP   + G   G  TG THL    PLI TTEGTG GQFLG  HQ QG    +
Subjt:  RHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV

Query:  IPAVILLGTVE
         P V LL   E
Subjt:  IPAVILLGTVE

KAG6607292.1 Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6489.61Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR
        KYLNRSVLEGRLITVEK                ARRRRGRTPTPGRYFGLRTVR
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR

KAG7036969.1 Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyrosperma]2.9e-204100Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDR
        KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDR
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDR

Query:  TLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNE
        TLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNE
Subjt:  TLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNE

Query:  AGDSGAIHTVSLLNEGARGVALAAILQGTIREEDILVGVEAWLQGLLVLLDLLIYFLATTLMVMNVGIFNSLTIF
        AGDSGAIHTVSLLNEGARGVALAAILQGTIREEDILVGVEAWLQGLLVLLDLLIYFLATTLMVMNVGIFNSLTIF
Subjt:  AGDSGAIHTVSLLNEGARGVALAAILQGTIREEDILVGVEAWLQGLLVLLDLLIYFLATTLMVMNVGIFNSLTIF

TYJ97341.1 serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]1.2e-7760.77Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEKHFSAEGTVLDVHL+ DP TRESRGFGFITMSSNDEAE CI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------------GADPILPIDAEDQMT
        KYLNRSVLEGR+ITVEK                ARRRRGRTPTPGRY GLRTV                                G DP+   D  D M 
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------------GADPILPIDAEDQMT

Query:  RHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV
           T +DHT LIA EDMILHTIG    IL  T+ ++        G ILDP   + G   G  TG THL    PLI TTEGTG GQFLG  HQ QG    +
Subjt:  RHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV

Query:  IPAVILLGTVE
         P V LL   E
Subjt:  IPAVILLGTVE

XP_022998028.1 serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita maxima]2.0e-6488.96Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR
        KYLNRSVLEGR+ITVEK                ARRRRGRTPTPGRYFGLRTVR
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR

TrEMBL top hitse value%identityAlignment
A0A5A7SM07 Serine/arginine-rich splicing factor SR45a-like2.7e-7861.09Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEKHFSAEGTVLDVHLV DP TRESRGFGFITMSSNDEAE CI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------------GADPILPIDAEDQMT
        KYLNRSVLEGR+ITVEK                ARRRRGRTPTPGRY GLRTV                                G DP+   D  D M 
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------------GADPILPIDAEDQMT

Query:  RHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV
           T +DHT LIA EDMILHTIG    IL  T+ ++        G ILDP   + G   G  TG THL    PLI TTEGTG GQFLG  HQ QG    +
Subjt:  RHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV

Query:  IPAVILLGTVE
         P V LL   E
Subjt:  IPAVILLGTVE

A0A5D3BFE7 Serine/arginine-rich splicing factor SR45a-like6.0e-7860.77Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RITRRELEKHFSAEGTVLDVHL+ DP TRESRGFGFITMSSNDEAE CI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------------GADPILPIDAEDQMT
        KYLNRSVLEGR+ITVEK                ARRRRGRTPTPGRY GLRTV                                G DP+   D  D M 
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR-------------------------------GADPILPIDAEDQMT

Query:  RHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV
           T +DHT LIA EDMILHTIG    IL  T+ ++        G ILDP   + G   G  TG THL    PLI TTEGTG GQFLG  HQ QG    +
Subjt:  RHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPTLHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDV

Query:  IPAVILLGTVE
         P V LL   E
Subjt:  IPAVILLGTVE

A0A6J1GAU6 serine/arginine-rich splicing factor SR45a-like isoform X11.7e-6489.54Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTV
        KYLNRSVLEGRLITVEK                ARRRRGRTPTPGRYFGLRTV
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTV

A0A6J1KD79 serine/arginine-rich splicing factor SR45a-like isoform X29.9e-6588.96Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR
        KYLNRSVLEGR+ITVEK                ARRRRGRTPTPGRYFGLRTVR
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR

A0A6J1KFN0 serine/arginine-rich splicing factor SR45a-like isoform X19.9e-6588.96Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR
        KYLNRSVLEGR+ITVEK                ARRRRGRTPTPGRYFGLRTVR
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVR

SwissProt top hitse value%identityAlignment
Q10422 Uncharacterized RNA-binding protein C25G10.011.7e-1334.62Show/hide
Query:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRF
        + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P T+ SRGFGF++ S+ +EA   I  LN     GR++ V+K  
Subjt:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRF

Query:  EIFASVHLKFFWQQARRRRGRTPTPGRYFG
                      A+R R  +PTPG+Y G
Subjt:  EIFASVHLKFFWQQARRRRGRTPTPGRYFG

Q14151 Scaffold attachment factor B22.7e-1144.16Show/hide
Query:  GNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK
        G NL+V+GLS      +L+  FS  G V+   +VT+  +  +R +GF+TMS++DEA +CI +L+R+ L GR+I+VEK
Subjt:  GNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK

Q3ZBT6 Transformer-2 protein homolog beta1.1e-0936.47Show/hide
Query:  RSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVE---------------------NPGNN--LYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRES
        RSR S    Y RS SRS S  RSRSRS S D                       NP  N  L V GLS   T R+L + FS  G + DV +V D  +R S
Subjt:  RSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVE---------------------NPGNN--LYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRES

Query:  RGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRT
        RGF F+   + D+A+   +  N   L+GR I V+  F I               +R  TPTPG Y G  T
Subjt:  RGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRT

Q80YR5 Scaffold attachment factor B21.2e-1144.16Show/hide
Query:  GNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK
        G NL+V+GLS      +L+  FS  G V+   +VT+  +  +R +GF+TMS++DEA +CI +L+R+ L GR+I+VEK
Subjt:  GNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRLITVEK

Q84TH4 Serine/arginine-rich splicing factor SR45a4.2e-4465.19Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG
        RCI+ L+ SVL+GR+ITVEK                ARRRRGRTPTPG+Y GLRT RG
Subjt:  RCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG

Arabidopsis top hitse value%identityAlignment
AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.0e-4565.19Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG
        RCI+ L+ SVL+GR+ITVEK                ARRRRGRTPTPG+Y GLRT RG
Subjt:  RCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRG

AT1G07350.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.1e-3764.71Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLSHR+T R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQ
        RCI+ L+ SVL+GR+ITVE           KF WQQ
Subjt:  RCIKYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQ

AT4G35785.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-3556.41Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIK
        S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIK
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIK

Query:  YLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGAD
        YLN+SVLEGR ITVE+                +RR+R RTPTPG Y GL++ R +D
Subjt:  YLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGAD

AT4G35785.2 RNA-binding (RRM/RBD/RNP motifs) family protein4.0e-3456.05Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGAD
        KYLN+SVLEGR ITVE+                +RR+R RTPTPG Y GL++ R +D
Subjt:  KYLNRSVLEGRLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGAD

AT4G35785.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.9e-2862.71Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRLITVEKR
        KYLN+SVLEGR ITVE++
Subjt:  KYLNRSVLEGRLITVEKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACTCCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGT
TGAAAATCCTGGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGAACAGTGCTAGATGTTCATCTCG
TGACTGATCCATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGT
CGATTAATCACCGTGGAGAAGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATA
CTTTGGACTTAGAACAGTCCGTGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCACCGCTATAGATCATACTCCCCTTATAGCCGCCG
AAGATATGATTCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACT
CTCCATGTAGTAGGTTGCCTACCAGGAGACACGACAGGTCGTACTCACCTTACGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGG
AGTGTCTCACCAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTTACTCCCGTAGCAGAAGTTATTCACG
CAGTCTTTCCCCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATA
AGAGAGGAGGATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTCCTTGCTACTACCTTGATGGTCATGAATGTTGG
TATTTTTAATTCACTCACTATTTTCTAA
mRNA sequenceShow/hide mRNA sequence
TTTATTGCATGCGCTTTCGTGCGAGATATTACTAACGTTGAATACTCGGTTGCATTTCCTTTCGATTTTGGTTTTGCTTCTGCAGTTTGGGCGGTCGCAGATGTCGTACT
CCAGAAGGTCTAGGTACTCCCGCTCTCCTTCATACAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGCCCTTCTAGTGACGTTGAAAATCCT
GGTAACAATTTGTACGTCACTGGTTTGTCACATAGAATTACAAGGAGAGAACTCGAGAAGCATTTTTCTGCTGAAGGAACAGTGCTAGATGTTCATCTCGTGACTGATCC
ATGGACTAGAGAATCCCGTGGTTTTGGATTCATTACCATGTCTAGTAATGATGAGGCTGAACGTTGCATCAAATATCTAAATCGATCTGTACTTGAAGGTCGATTAATCA
CCGTGGAGAAGAGATTTGAGATTTTTGCTTCTGTGCACTTGAAGTTTTTTTGGCAGCAGGCTCGAAGACGGAGAGGTAGAACTCCGACTCCAGGGAGATACTTTGGACTT
AGAACAGTCCGTGGAGCAGATCCCATTCTCCCAATCGACGCCGAAGATCAAATGACTCGCCATACCACCGCTATAGATCATACTCCCCTTATAGCCGCCGAAGATATGAT
TCTCCATACTATAGGCGTCATAGGTCGTATTCTCGATCGCACTCTCCATGTAGTAGGTCGCCTACCAGGAGACGTGACAGGTCGTATTCTCGATCCCACTCTCCATGTAG
TAGGTTGCCTACCAGGAGACACGACAGGTCGTACTCACCTTACGACTATTGCTCCCCTGATCCATACTACAGAAGGCACAGGGATCGGTCAGTTTCTAGGAGTGTCTCAC
CAAAGGCAAGGGTTTCTAGTAGACGTTATTCCCGCAGTTATTCTCCTAGGCACCGTAGAAGCGCCTCGAGGAGTTACTCCCGTAGCAGAAGTTATTCACGCAGTCTTTCC
CCTGAACGAAGCAGGAGATTCAGGAGCCATTCACACAGTATCTCTCCTGAACGAAGGAGCTCGAGGAGTCGCTCTCGCAGCCATACTCCAAGGCACCATAAGAGAGGAGG
ATATTCTGGTGGGAGTGGAAGCGTGGCTTCAAGGTCTGTTAGTCCTGCTTGATTTACTGATCTACTTCCTTGCTACTACCTTGATGGTCATGAATGTTGGTATTTTTAAT
TCACTCACTATTTTCTAA
Protein sequenceShow/hide protein sequence
MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSHRITRRELEKHFSAEGTVLDVHLVTDPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEG
RLITVEKRFEIFASVHLKFFWQQARRRRGRTPTPGRYFGLRTVRGADPILPIDAEDQMTRHTTAIDHTPLIAAEDMILHTIGVIGRILDRTLHVVGRLPGDVTGRILDPT
LHVVGCLPGDTTGRTHLTTIAPLIHTTEGTGIGQFLGVSHQRQGFLVDVIPAVILLGTVEAPRGVTPVAEVIHAVFPLNEAGDSGAIHTVSLLNEGARGVALAAILQGTI
REEDILVGVEAWLQGLLVLLDLLIYFLATTLMVMNVGIFNSLTIF