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Carg12467 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12467
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPhycobilisome rod-core linker polypeptide CpcG2 like
Genome locationCarg_Chr14:232388..234606
RNA-Seq ExpressionCarg12467
SyntenyCarg12467
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022935686.1 uncharacterized protein LOC111442470 [Cucurbita moschata]6.5e-28100Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
XP_022949523.1 uncharacterized protein LOC111452848 [Cucurbita moschata]4.6e-2694.37Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
XP_022983627.1 uncharacterized protein LOC111482182 [Cucurbita maxima]1.9e-2798.59Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAA+KKQELAEQVKDLSKNFDSFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
XP_023527736.1 uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo]7.1e-2795.77Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEV+VNSLANSR FQRFAVRTSKQIEDISNKA+QKKQELAEQVKDLSKNFDSFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
XP_038903248.1 uncharacterized protein LOC120089892 [Benincasa hispida]5.5e-2797.18Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEVLVNSLANSR FQRFAVRTSKQIE+ISNKAAQKKQELAEQVKDLSKNFDSFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
TrEMBL top hitse value%identityAlignment
A0A0A0L9U5 Uncharacterized protein6.5e-2694.29Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKN
        MAGGNF+HRV SYLVNEVLVNSLANSR+FQRFAVRTSKQIEDISNKAAQKKQELAEQVKD SKNFDSFKN
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKN
A0A6J1F5E7 uncharacterized protein LOC1114424703.1e-28100Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
A0A6J1GCB5 uncharacterized protein LOC1114528482.2e-2694.37Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
A0A6J1I5H8 uncharacterized protein LOC1114701022.2e-2694.37Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEVLVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQ+KDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
A0A6J1IZW4 uncharacterized protein LOC1114821829.1e-2898.59Show/hide
Query:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
        MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAA+KKQELAEQVKDLSKNFDSFKNQ
Subjt:  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G01350.1 unknown protein3.5e-1658.21Show/hide
Query:  GGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFK
        GGNF+ RV+SY+ NE +VN LANS AFQRFAVRTSK+IE++S  AA+ ++++A+Q+++ +KN DS K
Subjt:  GGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAATAGCCGTGCGTTTCAAAGGTTTGCTGTGAGGACATC
AAAGCAGATCGAGGATATATCCAACAAAGCTGCTCAGAAGAAGCAAGAACTTGCGGAACAAGTGAAAGATCTCTCCAAAAATTTTGATTCTTTCAAGAACCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGGTTCTCGTCAACAGTCTTGCGAATAGCCGTGCGTTTCAAAGGTTTGCTGTGAGGACATC
AAAGCAGATCGAGGATATATCCAACAAAGCTGCTCAGAAGAAGCAAGAACTTGCGGAACAAGTGAAAGATCTCTCCAAAAATTTTGATTCTTTCAAGAACCAATAATGGC
AGAGTGGAACGTTTTATTGCGACATTATGTAAAAAATCCAATTCCAACTTTTCAAATCCGTTTGGTTTGCTCTTTGCTTATAACAGTCGCAGATTCCATTAACTAGTAGT
AGTACTGTTTACAGCTTTATCTTGTCTATGTAATGAATAATTGTGACGGTAAAATTTTAGATCTGTTCCTGGAACTTGGTCAGCTGTGCCTGTGTTTGAAGCCGGCCAGG
ATAAACCAATTTCTGCCTACCTGTTTACAGCCTTATCTTGTCTCTATGTGGGACTTTTAAGCACGTCATGAATCAAAGCATTGCCAATTTTGGTATTTCAAGAAACTTGC
GTCCGATCACGAAGCAGAGCATGCCTTTTAGCCATTTGGATGAGAAAAGAAACCTTTTTGACACTCTAATTTTCCGTAAGAGAACCTTTCTGACGAATTTCTTTTGGACA
AGTTTTACGATTTTTATGAACACCTAAAGCTGAAATGCACAACTACCAAGTCCAAGCCTATCGT
Protein sequenceShow/hide protein sequence
MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKDLSKNFDSFKNQ