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Carg12524 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12524
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor bHLH155-like
Genome locationCarg_Chr14:501365..501737
RNA-Seq ExpressionCarg12524
SyntenyCarg12524
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR025610 - Transcription factor MYC/MYB N-terminal
IPR043561 - Transcription factor LHW-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580522.1 Transcription factor EMBRYO DEFECTIVE 1444, partial [Cucurbita argyrosperma subsp. sororia]1.3e-50100Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

KAG7017271.1 Transcription factor EMB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-50100Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

XP_022935170.1 transcription factor EMB1444-like isoform X1 [Cucurbita moschata]1.1e-4998.96Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMG TTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

XP_022983324.1 transcription factor EMB1444-like isoform X1 [Cucurbita maxima]6.4e-4795.83Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        METSALNQLLRSLCSNSQWIYAVFWKIKYHSST+LTWEDGYCNYS+LENHMG TTD GMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

XP_023527557.1 transcription factor EMB1444-like isoform X1 [Cucurbita pepo subsp. pepo]4.5e-4895.83Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        METSALNQLLRSLCSNSQWIYAVFWKIKYHSST+LTWEDGYCNYSELENHMG  TDYGMIKDRDEHVSSYYGDSGNCSVD AVADMFCRQYALGEG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

TrEMBL top hitse value%identityAlignment
A0A6J1CX60 transcription factor bHLH155-like9.7e-3367.65Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYG------DSGNCSVDPAVADMFCRQYALG
        MET+AL+QLL+S C+NS WIYAVFWKIKY S  +L WEDGYCNY + E HMG  T+Y +I +RDEHVSSYYG      DSG+CSV PAVADM C QY LG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYG------DSGNCSVDPAVADMFCRQYALG

Query:  EG
        EG
Subjt:  EG

A0A6J1F9V2 transcription factor EMB1444-like isoform X15.1e-5098.96Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMG TTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

A0A6J1FM70 transcription factor bHLH155-like isoform X22.6e-3371.57Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYY------GDSGNCSVDPAVADMFCRQYALG
        METSAL QLL+SLC+NSQWIYAVFWKIKY + ++LTWEDGYCN S+LENHMG  T+  MI +R+EHVSSYY      GDSG CSV  AVADMF  QYALG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYY------GDSGNCSVDPAVADMFCRQYALG

Query:  EG
        EG
Subjt:  EG

A0A6J1FRU3 transcription factor bHLH155-like isoform X12.6e-3371.57Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYY------GDSGNCSVDPAVADMFCRQYALG
        METSAL QLL+SLC+NSQWIYAVFWKIKY + ++LTWEDGYCN S+LENHMG  T+  MI +R+EHVSSYY      GDSG CSV  AVADMF  QYALG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYY------GDSGNCSVDPAVADMFCRQYALG

Query:  EG
        EG
Subjt:  EG

A0A6J1J5J4 transcription factor EMB1444-like isoform X13.1e-4795.83Show/hide
Query:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        METSALNQLLRSLCSNSQWIYAVFWKIKYHSST+LTWEDGYCNYS+LENHMG TTD GMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
Subjt:  METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

SwissProt top hitse value%identityAlignment
P0C7P8 Transcription factor EMB14441.6e-0840.66Show/hide
Query:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        L Q+LRS+CSN+ W YAVFWK+ +HS  VLT ED YC      NH     + G++ +     S + G   +  +  AVA M    ++LGEG
Subjt:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

Q58G01 Transcription factor bHLH1559.1e-0431.96Show/hide
Query:  SALNQLLRSLCSNSQWIYAVFWKIKYHSS-TVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDP---AVADMFCRQYALGEG
        S   ++L+S C N+ W YAVFW++ +  S  VLT ED Y ++     H  H                          DP   AVA M    Y+LGEG
Subjt:  SALNQLLRSLCSNSQWIYAVFWKIKYHSS-TVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDP---AVADMFCRQYALGEG

Q9XIN0 Transcription factor LHW3.7e-0555.56Show/hide
Query:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGY
        L + LRS+C N+QW YAVFWKI   +S++L WE+ Y
Subjt:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGY

Arabidopsis top hitse value%identityAlignment
AT1G06150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.1e-0940.66Show/hide
Query:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        L Q+LRS+CSN+ W YAVFWK+ +HS  VLT ED YC      NH     + G++ +     S + G   +  +  AVA M    ++LGEG
Subjt:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

AT1G06150.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.1e-0940.66Show/hide
Query:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG
        L Q+LRS+CSN+ W YAVFWK+ +HS  VLT ED YC      NH     + G++ +     S + G   +  +  AVA M    ++LGEG
Subjt:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG

AT1G60060.1 Serine/threonine-protein kinase WNK (With No Lysine)-related2.9e-0540Show/hide
Query:  TSALNQLLRSLC--SNSQWIYAVFWKI--------------KYHSST------VLTWEDGYCNYS
        T  L   LRSLC   NSQW+YAVFW+I               Y  S       +L WEDG+CN++
Subjt:  TSALNQLLRSLC--SNSQWIYAVFWKI--------------KYHSST------VLTWEDGYCNYS

AT2G27230.1 transcription factor-related2.6e-0655.56Show/hide
Query:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGY
        L + LRS+C N+QW YAVFWKI   +S++L WE+ Y
Subjt:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGY

AT2G27230.2 transcription factor-related2.6e-0655.56Show/hide
Query:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGY
        L + LRS+C N+QW YAVFWKI   +S++L WE+ Y
Subjt:  LNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACTTCGGCTCTCAACCAGCTGTTGAGAAGTCTTTGCAGCAATTCACAATGGATTTATGCTGTGTTTTGGAAGATTAAGTATCATAGTTCAACGGTATTGACTTG
GGAAGATGGGTATTGCAATTATTCAGAATTGGAAAATCATATGGGACACACAACAGATTATGGAATGATTAAAGACAGGGATGAACATGTTTCGTCATACTATGGTGATT
CTGGAAATTGTTCAGTTGATCCAGCAGTGGCTGATATGTTTTGCCGTCAATATGCCTTGGGAGAGGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACTTCGGCTCTCAACCAGCTGTTGAGAAGTCTTTGCAGCAATTCACAATGGATTTATGCTGTGTTTTGGAAGATTAAGTATCATAGTTCAACGGTATTGACTTG
GGAAGATGGGTATTGCAATTATTCAGAATTGGAAAATCATATGGGACACACAACAGATTATGGAATGATTAAAGACAGGGATGAACATGTTTCGTCATACTATGGTGATT
CTGGAAATTGTTCAGTTGATCCAGCAGTGGCTGATATGTTTTGCCGTCAATATGCCTTGGGAGAGGGGTAA
Protein sequenceShow/hide protein sequence
METSALNQLLRSLCSNSQWIYAVFWKIKYHSSTVLTWEDGYCNYSELENHMGHTTDYGMIKDRDEHVSSYYGDSGNCSVDPAVADMFCRQYALGEG