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Carg12532 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12532
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Genome locationCarg_Chr14:524991..525604
RNA-Seq ExpressionCarg12532
SyntenyCarg12532
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145630.1 light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]3.2e-4885.71Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELPKV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL

XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]1.1e-56100Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGILQVIGVDIGKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL

XP_023526506.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo]5.5e-5699.16Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        MASSATILSSSLLPA APICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGILQVIGVDIGKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL

XP_023528739.1 light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita pepo subsp. pepo]1.3e-4498.99Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELIL
        MASSATILSSSLLPA APICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELIL
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELIL

XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]8.2e-5289.92Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        MASS+ ILSSSLLPARAPIC +QDGRLCLFQ+GSVRANN R+R PFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAE+WNSRA MIGLIGIFVVELILN
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL

TrEMBL top hitse value%identityAlignment
A0A0A0LAI0 Uncharacterized protein6.4e-4281.82Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELI
        MASS+ IL SSL PARA  C+ QD R CLFQ+G SVRAN+ RAR  FR+Q AAKPPAGVELPKV+PKF+APFLGFTKTAEIWNSRA MIGLIGIFVVELI
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELI

Query:  LNKGILQVIGVDIGKGLDLPL
        LNKGILQVIGVD+GKGLDLPL
Subjt:  LNKGILQVIGVDIGKGLDLPL

A0A5A7TRS8 High-light-induced protein1.0e-3981.82Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELI
        MASS+ IL SSL PARA   ++QDGR  LFQ+G SVRANN RAR  FRVQ AAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELI
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELI

Query:  LNKGILQVIGVDIGKGLDLPL
        LNK ILQVIGVD+GKGLDLPL
Subjt:  LNKGILQVIGVDIGKGLDLPL

A0A6J1CV10 light-harvesting complex-like protein OHP1, chloroplastic1.6e-4885.71Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELPKV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL

A0A6J1F851 light-harvesting complex-like protein OHP1, chloroplastic5.4e-57100Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGILQVIGVDIGKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL

A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic5.4e-57100Show/hide
Query:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
Subjt:  MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGILQVIGVDIGKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL

SwissProt top hitse value%identityAlignment
O81208 Light-harvesting complex-like protein OHP1, chloroplastic1.2e-2457.14Show/hide
Query:  SATILSSSLLPARAPICDRQDGR---LCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        S++ LSSSL    + +     GR   LC            R + PF V+AAK P GV +PK QPK +  FLGFT+TAEIWNSRA MIGLIG F+VELILN
Subjt:  SATILSSSLLPARAPICDRQDGR---LCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGIL++IGV+IGKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL

Arabidopsis top hitse value%identityAlignment
AT5G02120.1 one helix protein8.3e-2657.14Show/hide
Query:  SATILSSSLLPARAPICDRQDGR---LCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN
        S++ LSSSL    + +     GR   LC            R + PF V+AAK P GV +PK QPK +  FLGFT+TAEIWNSRA MIGLIG F+VELILN
Subjt:  SATILSSSLLPARAPICDRQDGR---LCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILN

Query:  KGILQVIGVDIGKGLDLPL
        KGIL++IGV+IGKGLDLPL
Subjt:  KGILQVIGVDIGKGLDLPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCGCTACGATTTTATCGTCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTGACCGTCAAGACGGCCGACTCTGTCTCTTCCAAGTTGGGTCAGTCCGTGC
CAATAACAGAAGGGCTCGTGCCCCTTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTACAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCA
CTAAAACTGCTGAAATCTGGAATTCCAGAGCCAGCATGATAGGCCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGAT
ATTGGGAAAGGACTGGATCTTCCTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTCCGCTACGATTTTATCGTCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTGACCGTCAAGACGGCCGACTCTGTCTCTTCCAAGTTGGGTCAGTCCGTGC
CAATAACAGAAGGGCTCGTGCCCCTTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTACAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCA
CTAAAACTGCTGAAATCTGGAATTCCAGAGCCAGCATGATAGGCCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGAT
ATTGGGAAAGGACTGGATCTTCCTCTTTGA
Protein sequenceShow/hide protein sequence
MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVD
IGKGLDLPL