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Carg12548 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12548
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmitochondrial import inner membrane translocase subunit Tim9
Genome locationCarg_Chr14:596768..599120
RNA-Seq ExpressionCarg12548
SyntenyCarg12548
Gene Ontology termsNA
InterPro domainsIPR004217 - Tim10-like
IPR035427 - Tim10-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON38573.1 Tim10/DDP family zinc finger [Parasponia andersonii]2.5e-4092.47Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDK MLADL+ LPEEDKL+M+TMIDQLQIRDSLRMYNSLVERCF DCID FQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

XP_004137789.1 mitochondrial import inner membrane translocase subunit Tim9 [Cucumis sativus]7.1e-4396.77Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDKNMLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

XP_022145535.1 mitochondrial import inner membrane translocase subunit Tim9-like [Momordica charantia]1.0e-4194.62Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDK+MLADL+GLP+EDKLKMA+MIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

XP_022934857.1 mitochondrial import inner membrane translocase subunit Tim9 [Cucurbita moschata]6.4e-44100Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

XP_042940042.1 mitochondrial import inner membrane translocase subunit Tim9 [Carya illinoinensis]1.6e-3989.25Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDK+MLADLE LPEEDK++M+TMI+QLQIRDSLRMYNSLVERCF DC+D FQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAAT+D
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

TrEMBL top hitse value%identityAlignment
A0A0A0LFK3 zf-Tim10_DDP domain-containing protein3.5e-4396.77Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDKNMLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

A0A1S3B5G6 mitochondrial import inner membrane translocase subunit Tim93.5e-4396.77Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDKNMLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

A0A5D3DN53 Mitochondrial import inner membrane translocase subunit Tim93.5e-4396.77Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDKNMLADL+GLPEEDK+KMATMIDQLQIRDSLRMYNSLVERCF DCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

A0A6J1F3Y8 mitochondrial import inner membrane translocase subunit Tim93.1e-44100Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

A0A6J1IZ98 mitochondrial import inner membrane translocase subunit Tim93.1e-44100Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

SwissProt top hitse value%identityAlignment
P57745 Mitochondrial import inner membrane translocase subunit Tim99.1e-1746.15Show/hide
Query:  LEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELN
        ++ L   ++ + + +I+  Q++D +R+Y++LVERCF DC+++F    LT +E+TC+ RC+EKFLKHS RVG+RF E N
Subjt:  LEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELN

Q757S0 Mitochondrial import inner membrane translocase subunit TIM97.0e-1746.15Show/hide
Query:  LEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELN
        ++ L   ++ +   +++Q Q++D +R+Y++LVERCF+DC+++F    LT +E+TC+ RC+EKFLKHS RVG RF E N
Subjt:  LEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELN

Q9XGX7 Mitochondrial import inner membrane translocase subunit Tim97.7e-4082.8Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDK+ML DL+GLPEEDK++MA M+DQLQIRDSLRMYNSLVERCF DC+D F+RK+L KQEE+CVRRCAEKFLKHSMRVGMRFAELNQG AT D
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

Q9XGX8 Mitochondrial import inner membrane translocase subunit Tim92.6e-4083.87Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MDKNML DL+ LPEEDKLKMA+MI+QLQIRDSLRMYN+LVERCF DC+D+F+RK+L KQEETCV+RCAEKFLKHSMRVG+RFAELNQGAAT+D
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

Q9XGX9 Mitochondrial import inner membrane translocase subunit TIM91.6e-3780.65Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MD +M+A L+GLPEEDK KMA+MIDQLQ+RDSLRMYNSLVERCF DC+D+F RKSL KQEETCV RCAEKFLKH+MRVGMRFAELNQ A T D
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD

Arabidopsis top hitse value%identityAlignment
AT3G46560.1 Tim10/DDP family zinc finger protein1.1e-3880.65Show/hide
Query:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD
        MD +M+A L+GLPEEDK KMA+MIDQLQ+RDSLRMYNSLVERCF DC+D+F RKSL KQEETCV RCAEKFLKH+MRVGMRFAELNQ A T D
Subjt:  MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGAACATGCTTGCTGATTTGGAGGGTCTTCCTGAAGAAGACAAGCTCAAAATGGCCACCATGATCGACCAGCTCCAGATTCGAGACAGTCTGAGAATGTACAA
CTCATTGGTCGAGAGATGCTTTGCGGATTGCATAGACAACTTTCAGCGAAAATCCCTAACGAAGCAAGAGGAAACATGTGTACGTAGGTGTGCCGAGAAGTTCTTGAAGC
ACTCAATGCGCGTTGGAATGAGATTTGCTGAGCTCAACCAAGGAGCCGCTACCTCAGATTAA
mRNA sequenceShow/hide mRNA sequence
ACTATTACGCTTCCTCCAACTTATAATTCCAACCTAGCTGAGCTATTAGCGGCGATACAGAGAAGGGAGAAGAAACCAGAGAAGTTGAACCCTAAACCCTTTGCTTTCTT
TGGAGTCGAAGATGGACAAGAACATGCTTGCTGATTTGGAGGGTCTTCCTGAAGAAGACAAGCTCAAAATGGCCACCATGATCGACCAGCTCCAGATTCGAGACAGTCTG
AGAATGTACAACTCATTGGTCGAGAGATGCTTTGCGGATTGCATAGACAACTTTCAGCGAAAATCCCTAACGAAGCAAGAGGAAACATGTGTACGTAGGTGTGCCGAGAA
GTTCTTGAAGCACTCAATGCGCGTTGGAATGAGATTTGCTGAGCTCAACCAAGGAGCCGCTACCTCAGATTAATGTCGCATCAGAGGACACCCAGACATATTCTTGAGAC
CTTCAGTTCTTTCACCTCTGGAATTATAGTATGTTTCTTCCATATTCTTGAAACCTTCAGTGCTTTCACCTCTGGATTTATAGCACGTCTTCCATATATGTTGCAACTGG
GATTAAGTGGTGATTTGATTTGACTTATATATTAAAGTTTTAGTATCAGACTTTCAATAAATGTTTGAGATTTGATATCCATTAGGATGATTTAACTTAGTTTTTTGCTT
ATTGCTGGTAATATGGCCTTTTCTTCAACTTCATAACCAATTTGATAGAAAAATGATTGGAGATCAAATCTTCAACAGTCAGATGAACTGCAATTGGTTGGGTTTGTTTG
GCAGAGCCTTCTGATGAACGCACT
Protein sequenceShow/hide protein sequence
MDKNMLADLEGLPEEDKLKMATMIDQLQIRDSLRMYNSLVERCFADCIDNFQRKSLTKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD