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Carg12553 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12553
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionXB3 ortholog 1 in Arabidopsis thaliana
Genome locationCarg_Chr14:612381..613333
RNA-Seq ExpressionCarg12553
SyntenyCarg12553
Gene Ontology termsGO:0006464 - cellular protein modification process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0140096 - catalytic activity, acting on a protein (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017300.1 putative E3 ubiquitin-protein ligase XBAT31, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-106100Show/hide
Query:  MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND
        MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND
Subjt:  MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND

Query:  LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASSFGCTDGAHIVKYARVVWFDVGKRTR
        LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASSFGCTDGAHIVKYARVVWFDVGKRTR
Subjt:  LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASSFGCTDGAHIVKYARVVWFDVGKRTR

XP_022934856.1 putative E3 ubiquitin-protein ligase XBAT31 [Cucurbita moschata]1.4e-88100Show/hide
Query:  MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND
        MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND
Subjt:  MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND

Query:  LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLR
        LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLR
Subjt:  LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLR

XP_022983578.1 putative E3 ubiquitin-protein ligase XBAT31 [Cucurbita maxima]1.9e-7489.38Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIPF VALKHKHQACAALLNPSSPEPLVWPSPLKLIIELD DAKVLLEKALMDANM+REKAILMEKFITPPCPLKSDAHIDAYDDNDLASED DTELC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS
             CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTA PTAPVCPFCRSSIAQLL     S
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS

XP_038904628.1 putative E3 ubiquitin-protein ligase XBAT31 isoform X1 [Benincasa hispida]2.2e-6781.88Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIPFTVALKHKHQ CAALLNPSSPEPLVWPSPLKLII+LD DAK+LLEKALMDANM+REKAIL E FITP CPL++D  IDAY DNDLASE SDT+LC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS
             CNIEAQPCGHRMCAHCTL+LCCHKKPNPTTA PTAPVCPFCRSSI QLLV    S
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS

XP_038904629.1 putative E3 ubiquitin-protein ligase XBAT31 isoform X2 [Benincasa hispida]2.2e-6781.88Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIPFTVALKHKHQ CAALLNPSSPEPLVWPSPLKLII+LD DAK+LLEKALMDANM+REKAIL E FITP CPL++D  IDAY DNDLASE SDT+LC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS
             CNIEAQPCGHRMCAHCTL+LCCHKKPNPTTA PTAPVCPFCRSSI QLLV    S
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS

TrEMBL top hitse value%identityAlignment
A0A0A0LFK7 Uncharacterized protein3.5e-6682.58Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIPFTVALKHKHQ CAALLNPSSPEPL+WPSPLKLII+LD DAKVLLEKALMDANM+REKAIL E FIT  CPL++D  IDAY DNDLASE SDT+LC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLV
             CNIEAQPCGHRMCAHCTL+LCCHKKPNPTTA PTAPVCPFCRSSI++LLV
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLV

A0A6J1F306 putative E3 ubiquitin-protein ligase XBAT316.5e-89100Show/hide
Query:  MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND
        MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND
Subjt:  MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDND

Query:  LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLR
        LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLR
Subjt:  LASEDSDTELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLR

A0A6J1GBC7 putative E3 ubiquitin-protein ligase XBAT311.2e-6679.39Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIEL  DAKVLLEKALMDANM+REKAI  E F+TPPCP +SD  ID+  DNDLASE SDTELC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASSFGCTD
             CNIEAQPCGHRMCAHCTL+LCCHKKPNPTTA PTAPVCPFCR SI QLLV    S    D
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASSFGCTD

A0A6J1I3N0 putative E3 ubiquitin-protein ligase XBAT311.2e-6679.39Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIEL  DAKVLLEKALMDANM+REKAI  E F+TPPCP +SD  ID+  DNDLASE SDTELC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASSFGCTD
             CNIEAQPCGHRMCAHCTL+LCCHKKPNPTTA PTAPVCPFCR SI QLLV    S    D
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASSFGCTD

A0A6J1J848 putative E3 ubiquitin-protein ligase XBAT319.2e-7589.38Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIPF VALKHKHQACAALLNPSSPEPLVWPSPLKLIIELD DAKVLLEKALMDANM+REKAILMEKFITPPCPLKSDAHIDAYDDNDLASED DTELC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS
             CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTA PTAPVCPFCRSSIAQLL     S
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS

SwissProt top hitse value%identityAlignment
Q65XV2 E3 ubiquitin-protein ligase XB31.4e-4358.75Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIP++VALK  H ACAALLNP+S EP+VWPSPLK I EL+ +AK LLE ALM+AN +REK IL     + P P   D   D+ DD D  SE SDTELC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS
             C IE Q CGH+MCA CTL LCCH KPNPTT  P +P CPFCR SI++L+V +  S
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS

Q94B55 Putative E3 ubiquitin-protein ligase XBAT312.1e-4461.94Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIP+ VA+KHKH AC ALLNPSS EPLVWPSPLK I EL+ +AK+LLE+ALM+AN +REK IL     + P P  SD      DDN   SE SDTELC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLV
             C IE + CGH+MCA CTL LCCH KPNPTT+  T PVCPFCRS+IA L+V
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLV

Q94CT7 Probable E3 ubiquitin-protein ligase XBOS311.5e-3447.47Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDT-----
        RI + VA++  H+ACAALLNP++ EP+VWPSPLK I EL++DAK LLE ALM+AN +REK IL            SD +I   D+ + + ++ +      
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDT-----

Query:  ELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS
        E  C++E + CGH+MCA CTL +CCH KPNP T     P CPFCR++I++L+V   +S
Subjt:  ELCCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASS

Arabidopsis top hitse value%identityAlignment
AT2G28840.1 XB3 ortholog 1 in Arabidopsis thaliana1.5e-4561.94Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIP+ VA+KHKH AC ALLNPSS EPLVWPSPLK I EL+ +AK+LLE+ALM+AN +REK IL     + P P  SD      DDN   SE SDTELC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLV
             C IE + CGH+MCA CTL LCCH KPNPTT+  T PVCPFCRS+IA L+V
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLV

AT2G28840.2 XB3 ortholog 1 in Arabidopsis thaliana1.5e-4561.94Show/hide
Query:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--
        RIP+ VA+KHKH AC ALLNPSS EPLVWPSPLK I EL+ +AK+LLE+ALM+AN +REK IL     + P P  SD      DDN   SE SDTELC  
Subjt:  RIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTELC--

Query:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLV
             C IE + CGH+MCA CTL LCCH KPNPTT+  T PVCPFCRS+IA L+V
Subjt:  -----CNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTTTCTAAAGGTATCAGCTCGATCATTTGCAGGAGGATACCATTTACGGTTGCTTTAAAGCATAAGCATCAAGCTTGTGCAGCTTTATTGAACCCTTCATCACC
AGAACCTCTAGTATGGCCTTCACCTTTGAAGCTAATCATTGAGCTAGATTCAGATGCAAAAGTTTTGCTAGAAAAGGCTTTGATGGATGCAAACATGCAGAGAGAGAAGG
CCATATTGATGGAAAAATTCATCACACCTCCTTGTCCTTTGAAATCTGATGCTCACATTGATGCGTATGATGACAATGACTTAGCATCTGAGGATAGCGATACAGAGTTG
TGCTGCAATATTGAAGCCCAACCATGTGGCCATAGAATGTGCGCCCATTGCACATTAACTTTATGCTGCCACAAAAAGCCTAATCCAACGACAGCTCGTCCAACAGCCCC
TGTTTGCCCATTTTGCAGAAGCAGCATTGCTCAACTTCTTGTGCTGAGAGCATCGTCATTTGGATGTACTGATGGGGCTCACATTGTAAAGTATGCAAGGGTCGTGTGGT
TCGATGTGGGCAAACGTACGAGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTTTTCTAAAGGTATCAGCTCGATCATTTGCAGGAGGATACCATTTACGGTTGCTTTAAAGCATAAGCATCAAGCTTGTGCAGCTTTATTGAACCCTTCATCACC
AGAACCTCTAGTATGGCCTTCACCTTTGAAGCTAATCATTGAGCTAGATTCAGATGCAAAAGTTTTGCTAGAAAAGGCTTTGATGGATGCAAACATGCAGAGAGAGAAGG
CCATATTGATGGAAAAATTCATCACACCTCCTTGTCCTTTGAAATCTGATGCTCACATTGATGCGTATGATGACAATGACTTAGCATCTGAGGATAGCGATACAGAGTTG
TGCTGCAATATTGAAGCCCAACCATGTGGCCATAGAATGTGCGCCCATTGCACATTAACTTTATGCTGCCACAAAAAGCCTAATCCAACGACAGCTCGTCCAACAGCCCC
TGTTTGCCCATTTTGCAGAAGCAGCATTGCTCAACTTCTTGTGCTGAGAGCATCGTCATTTGGATGTACTGATGGGGCTCACATTGTAAAGTATGCAAGGGTCGTGTGGT
TCGATGTGGGCAAACGTACGAGA
Protein sequenceShow/hide protein sequence
MKFSKGISSIICRRIPFTVALKHKHQACAALLNPSSPEPLVWPSPLKLIIELDSDAKVLLEKALMDANMQREKAILMEKFITPPCPLKSDAHIDAYDDNDLASEDSDTEL
CCNIEAQPCGHRMCAHCTLTLCCHKKPNPTTARPTAPVCPFCRSSIAQLLVLRASSFGCTDGAHIVKYARVVWFDVGKRTR