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Carg12570 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12570
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone H2B
Genome locationCarg_Chr14:663049..664181
RNA-Seq ExpressionCarg12570
SyntenyCarg12570
Gene Ontology termsGO:0005694 - chromosome (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044073.1 BRI1-KD interacting protein [Cucumis melo var. makuwa]3.1e-0981.82Show/hide
Query:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE
        MPS  IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR + A E
Subjt:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE

KAG6580562.1 hypothetical protein SDJN03_20564, partial [Cucurbita argyrosperma subsp. sororia]3.0e-28100Show/hide
Query:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILLLCEVLA
        MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILLLCEVLA
Subjt:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILLLCEVLA

KAG6580563.1 hypothetical protein SDJN03_20565, partial [Cucurbita argyrosperma subsp. sororia]2.3e-6597.66Show/hide
Query:  GNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFR
        GNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFR
Subjt:  GNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQFR

Query:  HYFRPHPPKIIRSASAAAATPLIFCSIM
        HYFRPHPPKIIRSASAAAA PLIFCS++
Subjt:  HYFRPHPPKIIRSASAAAATPLIFCSIM

KAG6596422.1 hypothetical protein SDJN03_09602, partial [Cucurbita argyrosperma subsp. sororia]4.6e-1369.01Show/hide
Query:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILLLCEVLAGFL
        MPSVPIDL L  LLPSLTSFHGGSSSHRLKRLEKGDRR   ASE    G WLLV R F IL+L +  + F+
Subjt:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILLLCEVLAGFL

KAG7017317.1 hypothetical protein SDJN02_19180, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-116100Show/hide
Query:  MGFEIWRRSPIGNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLT
        MGFEIWRRSPIGNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLT
Subjt:  MGFEIWRRSPIGNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLT

Query:  QRISSVRSQFRHYFRPHPPKIIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILL
        QRISSVRSQFRHYFRPHPPKIIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILL
Subjt:  QRISSVRSQFRHYFRPHPPKIIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILL

Query:  LCEVLAGFLCLI
        LCEVLAGFLCLI
Subjt:  LCEVLAGFLCLI

TrEMBL top hitse value%identityAlignment
A0A1S3B5I5 uncharacterized protein LOC1034864061.3e-0889.47Show/hide
Query:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR
        MPS  IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR
Subjt:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRR

A0A314UVH6 Uncharacterized protein2.8e-0880Show/hide
Query:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAV
        MPSVPI L L PL+P+LTSFHGGSSSHRLKR+EK DRRA+
Subjt:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAV

A0A314XYQ7 Uncharacterized protein8.2e-0877.5Show/hide
Query:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAV
        MPSVPI   L PL+P+LTSFHGGSSSHRLKR+EK DRRA+
Subjt:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAV

A0A498IEK4 Uncharacterized protein7.0e-0770.45Show/hide
Query:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE
        MPSVP  L L P +P+LTSFHGGS SHRLKRLEKGDRR  +  E
Subjt:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE

A0A5D3DN94 BRI1-KD interacting protein1.5e-0981.82Show/hide
Query:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE
        MPS  IDL+L PLLPSLTSFHGGSSSHRLKRLEKGDRR + A E
Subjt:  MPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTTGAGATATGGAGACGCAGTCCAATAGGAAATGGGCTTTCAGATAAGAGGCTCAGTCCAATAGGAAATGGGCTTCGAGATAAGCGGGCCCAGTCCAATATGAA
ATGGGCTTTCAGATATGTAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCACTGGAAATATCTGAAAACAAATAAATCAGCGA
ATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCGCAGCTATATCTATGAGACCGATTCATTTCTCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTC
CGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTT
CCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGCGGTCGAAGCCTCTGAGAAGC
GAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTACAATCCTACTATTGTGCGAGGTTCTAGCAGGTTTCTTGTGTCTTATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTTGAGATATGGAGACGCAGTCCAATAGGAAATGGGCTTTCAGATAAGAGGCTCAGTCCAATAGGAAATGGGCTTCGAGATAAGCGGGCCCAGTCCAATATGAA
ATGGGCTTTCAGATATGTAGACGCTGTCCAACAGGAAATGGGCTTTAAGAGAAGGAGGCCCAGCCCAATAGGAAAGCACTGGAAATATCTGAAAACAAATAAATCAGCGA
ATTGTCAAAGGAAGAAAACGTGTAGAGCTTTGATTCGGCCTCGCAGCTATATCTATGAGACCGATTCATTTCTCTTGACCCAAAGGATTAGTTCCGTAAGATCCCAATTC
CGCCACTATTTTCGACCTCATCCTCCCAAAATTATCCGATCCGCTTCCGCTGCCGCTGCAACGCCGCTGATCTTTTGCAGCATTATGCCTTCGGTACCAATTGATCTCTT
CCTGCACCCTCTGCTTCCTTCTTTGACTTCTTTTCATGGTGGTTCATCGTCGCATCGTCTTAAGCGGCTTGAAAAGGGTGATCGGCGTGCGGTCGAAGCCTCTGAGAAGC
GAGTCACTGGCAATTGGCTACTCGTTGAGAGGGGTTTTACAATCCTACTATTGTGCGAGGTTCTAGCAGGTTTCTTGTGTCTTATATAA
Protein sequenceShow/hide protein sequence
MGFEIWRRSPIGNGLSDKRLSPIGNGLRDKRAQSNMKWAFRYVDAVQQEMGFKRRRPSPIGKHWKYLKTNKSANCQRKKTCRALIRPRSYIYETDSFLLTQRISSVRSQF
RHYFRPHPPKIIRSASAAAATPLIFCSIMPSVPIDLFLHPLLPSLTSFHGGSSSHRLKRLEKGDRRAVEASEKRVTGNWLLVERGFTILLLCEVLAGFLCLI