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Carg12592 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12592
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNuclear transcription factor Y subunit B-1
Genome locationCarg_Chr14:770915..772424
RNA-Seq ExpressionCarg12592
SyntenyCarg12592
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580583.1 putative LRR receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. sororia]2.2e-1395.45Show/hide
Query:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        ++GDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
Subjt:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
KAG7017338.1 hypothetical protein SDJN02_19202, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-50100Show/hide
Query:  SSPFPYLHHRPIHSTTPFPPDLTPPLSLSLAPKLQIFRFSQQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQRRRNSSASTYGMFDSD
        SSPFPYLHHRPIHSTTPFPPDLTPPLSLSLAPKLQIFRFSQQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQRRRNSSASTYGMFDSD
Subjt:  SSPFPYLHHRPIHSTTPFPPDLTPPLSLSLAPKLQIFRFSQQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQRRRNSSASTYGMFDSD

Query:  FDR
        FDR
Subjt:  FDR
XP_022935570.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita moschata]2.9e-1397.67Show/hide
Query:  QGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        +GDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
Subjt:  QGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
XP_022935572.1 nuclear transcription factor Y subunit B-1-like isoform X2 [Cucurbita moschata]2.2e-1395.45Show/hide
Query:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        ++GDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
Subjt:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
XP_022983508.1 nuclear transcription factor Y subunit B-1-like isoform X2 [Cucurbita maxima]2.2e-1395.45Show/hide
Query:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        ++GDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
Subjt:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
TrEMBL top hitse value%identityAlignment
A0A5A7TMC5 Nuclear transcription factor Y subunit B-18.6e-1181.82Show/hide
Query:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        ++GDTKGSAKGGD SAKKEAHPT +PQ+AH GSFSQGVNYA+SQ
Subjt:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
A0A6J1F5Y3 nuclear transcription factor Y subunit B-1-like isoform X21.1e-1395.45Show/hide
Query:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        ++GDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
Subjt:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
A0A6J1FB03 nuclear transcription factor Y subunit B-1-like isoform X11.4e-1397.67Show/hide
Query:  QGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        +GDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
Subjt:  QGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
A0A6J1J2H6 nuclear transcription factor Y subunit B-1-like isoform X11.4e-1397.67Show/hide
Query:  QGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        +GDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
Subjt:  QGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
A0A6J1J7Y3 nuclear transcription factor Y subunit B-1-like isoform X21.1e-1395.45Show/hide
Query:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
        ++GDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
Subjt:  QQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G53340.1 nuclear factor Y, subunit B109.1e-0546.43Show/hide
Query:  KLQIFRFSQ-QGDTKGSAKGGDASAKKEAHPTSV---PQIAHGGSFSQGVNYATSQ
        K+ + R+ + +GDTKGS KGG++SAK++  P+ V    Q+   GSFSQG  Y  SQ
Subjt:  KLQIFRFSQ-QGDTKGSAKGGDASAKKEAHPTSV---PQIAHGGSFSQGVNYATSQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGTCTCCTTTTCCCTATCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCACCCGATCTTACTCCTCCTCTCTCTCTCTCTCTCGCGCCCAAATTACAAATCTT
CCGTTTCTCCCAACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCGGCTAAGAAAGAAGCTCATCCAACCTCTGTTCCTCAGATCGCTCATGGAGGCTCGT
TTTCCCAAGGAGTTAATTATGCGACTTCTCAAAGGCGAAGAAATAGTTCTGCCAGTACTTACGGCATGTTTGATAGTGATTTTGATAGA
mRNA sequenceShow/hide mRNA sequence
TCGTCTCCTTTTCCCTATCTTCACCATCGTCCGATCCATTCCACCACTCCATTTCCACCCGATCTTACTCCTCCTCTCTCTCTCTCTCTCGCGCCCAAATTACAAATCTT
CCGTTTCTCCCAACAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCGGCTAAGAAAGAAGCTCATCCAACCTCTGTTCCTCAGATCGCTCATGGAGGCTCGT
TTTCCCAAGGAGTTAATTATGCGACTTCTCAAAGGCGAAGAAATAGTTCTGCCAGTACTTACGGCATGTTTGATAGTGATTTTGATAGA
Protein sequenceShow/hide protein sequence
SSPFPYLHHRPIHSTTPFPPDLTPPLSLSLAPKLQIFRFSQQGDTKGSAKGGDASAKKEAHPTSVPQIAHGGSFSQGVNYATSQRRRNSSASTYGMFDSDFDR