CuGenDBv2

Gene ID	Carg12665
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor SCREAM2-like
Genome location	Carg_Chr07:7221733..7222301
RNA-Seq Expression	Carg12665
Synteny	Carg12665
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595565.1 hypothetical protein SDJN03_12118, partial [Cucurbita argyrosperma subsp. sororia]

8.6e-51

80.95

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT
                         NEDTKIVKPQVVKKAVKQAIKEWSESNGQT
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT

KAG7027546.1 hypothetical protein SDJN02_11560, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-71

100

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT
        NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT

XP_022925050.1 uncharacterized protein LOC111432414 [Cucurbita moschata]

1.2e-49

78.91

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRIL+AFEKLGLEVLDANVSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT
                         NEDTKIVKP+VVK+AVKQAIKEWSESNGQT
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT

XP_022966518.1 uncharacterized protein LOC111466169 [Cucurbita maxima]

4.3e-50

79.59

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVY+EKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT
                         NEDTK+VKPQVVKKAVKQAIKEWSESNGQT
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT

XP_023518447.1 uncharacterized protein LOC111781937 [Cucurbita pepo subsp. pepo]

1.8e-48

77.55

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAA SSSMNHEKPTEFDASTSSSAVVNVESL RGFLI+VYLEKNSPGLL+RILEAFEKLGLEVLDANVSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT
                         NEDTKIVKPQVVKKAVKQAIKEWSESN QT
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CLI8 uncharacterized protein LOC103502184

2.0e-37

65.07

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAA+++ +H    EF ASTSSSAVVNVES+ RGFLINV+LE+NSPGLLVRILEAFEKLGL VLDA++SCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQ
                         NE  KI+K QVVK AVKQAIKEWSES+GQ
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQ

A0A6J1EGT3 uncharacterized protein LOC111432414

6.0e-50

78.91

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRIL+AFEKLGLEVLDANVSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT
                         NEDTKIVKP+VVK+AVKQAIKEWSESNGQT
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT

A0A6J1GFJ5 uncharacterized protein LOC111453491

2.8e-39

69.18

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAA SS+NH K  EF ASTSSSAVVNVE+L RGFLINV+ E+NSPGLLV+ILEAFEKLGLEVLDA+VSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQ
                         NE TKI+K QVVK AVKQAIKEWSESNGQ
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQ

A0A6J1HSD7 uncharacterized protein LOC111466169

2.1e-50

79.59

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVY+EKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT
                         NEDTK+VKPQVVKKAVKQAIKEWSESNGQT
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT

A0A6J1IM47 uncharacterized protein LOC111477723

1.3e-39

69.86

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM
        MGSRERKKAAA SS+NH K  EF ASTSSSAVVNVE L RGFLINV+ E+NSPGLLVRILEAFEKLGLEVLDA+VSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADM

Query:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQ
                         NE TKI+K QVVK AVKQAIKEWSESNGQ
Subjt:  NINSTIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)

5.3e-14

34.29

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Query:  ERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADMNINS
        ER     ++  +  +PT+       + +V VE+L +GF+INV+  KN PG+LV +LEAFE +GL VL+A  SC+D F L A+G                 
Subjt:  ERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADMNINS

Query:  TIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESN
                   ++NED + +  + VK+AV  AI+ W E N
Subjt:  TIKTSNSLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESN

AT3G56220.1 transcription regulators

6.9e-14

35.25

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Query:  FDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADMNINSTIKTSNSLCFVVQNEDTK
        F  S+  + +V VE+L +GF+I V   KN  G+LV +LE FE LGL+V++A VSC+D F L A+G                              N+D  
Subjt:  FDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADMNINSTIKTSNSLCFVVQNEDTK

Query:  IVKPQVVKKAVKQAIKEWSESN
         +  + VK+AV +AI+ WS+S+
Subjt:  IVKPQVVKKAVKQAIKEWSESN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTTCGAGAGAGCGAAAGAAAGCAGCAGCATCTTCCTCAATGAATCATGAGAAGCCCACAGAATTTGATGCATCCACAAGCTCTAGTGCTGTGGTGAATGTCGAGAG
TTTAGTGAGAGGATTTCTCATAAACGTATATTTAGAAAAGAATTCGCCTGGATTGTTAGTTCGGATTCTAGAAGCCTTCGAAAAATTGGGACTCGAAGTCCTCGATGCTA
ACGTGTCTTGTTCTGATTGTTTTCAACTCCAAGCAGTCGGGGAAGAGGTTCGAGTTCCGTATCTTAAGCTTGCTGACATGAACATTAACTCAACGATTAAAACTTCAAAT
TCGCTTTGTTTTGTTGTGCAGAATGAAGATACAAAAATCGTAAAGCCCCAAGTGGTGAAAAAAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAACGGGCAGAC
ATAA

mRNA sequence

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Protein sequence

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MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEEVRVPYLKLADMNINSTIKTSN
SLCFVVQNEDTKIVKPQVVKKAVKQAIKEWSESNGQT

Carg12665 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome