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Carg12668 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12668
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCarg_Chr07:7247703..7248533
RNA-Seq ExpressionCarg12668
SyntenyCarg12668
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027549.1 hypothetical protein SDJN02_11563, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-82100Show/hide
Query:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVAQELDYYRVFEMNYTADALILKKFIEPDRKPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNT
        MESSISDTCMFLQNAQVILDSIHRTYSKARDVAQELDYYRVFEMNYTADALILKKFIEPDRKPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNT
Subjt:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVAQELDYYRVFEMNYTADALILKKFIEPDRKPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNT

Query:  KEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTISKEPDLETDDWTC
        KEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTISKEPDLETDDWTC
Subjt:  KEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTISKEPDLETDDWTC

RVW90686.1 hypothetical protein CK203_038764 [Vitis vinifera]6.2e-1551.04Show/hide
Query:  DALILKKFIEPDRKPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTIS
        DA++LK FIE DRKPRHTKE CWKLNGKPP+ EW N GG Q+     +    K+PK ++ S    T  FN+EE+E+L+  L SL+KP+ +  L +S
Subjt:  DALILKKFIEPDRKPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTIS

RVW96205.1 hypothetical protein CK203_037755 [Vitis vinifera]9.2e-1935.19Show/hide
Query:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------
        M   ISDTCMFL  A+ I D+I +TYSKARD A                              QELD+YRV +     D ++LK FIE DR         
Subjt:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------

Query:  ---------------------------------KPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQ
                                         KPRHTKE CWKLNGKPP+HEW+NRG  Q+     +    ++PK ++ S    T+ FN+EE+E+LR  
Subjt:  ---------------------------------KPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQ

Query:  LNSLNKPSSSSVLTIS
        L SL+K + +  L +S
Subjt:  LNSLNKPSSSSVLTIS

XP_017441221.1 PREDICTED: uncharacterized protein LOC108346670 [Vigna angularis]8.1e-1530.08Show/hide
Query:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------
        ME++ISDTCMFL  A+ I DSI+RTYSKA D A                              QELD+Y+VFEM    DA++LK FIE DR         
Subjt:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------

Query:  -------------------------------------------------------------------------------KPRHTKESCWKLNGKPPNHEW
                                                                                       KPRHT+E CWKL+GKPP  EW
Subjt:  -------------------------------------------------------------------------------KPRHTKESCWKLNGKPPNHEW

Query:  DNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSS
         NRGG QK  +   +   KE      SP +++  FN EEI++L+  L ++ +PS S
Subjt:  DNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSS

XP_022637110.1 uncharacterized protein LOC106762530 isoform X4 [Vigna radiata var. radiata]4.3e-1631.3Show/hide
Query:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------
        ME++ISDTCMFL  A+ I DSI+RTYSKA DVA                              QELD+YRVFEM    DA++LKKFIE DR         
Subjt:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------

Query:  -------------------------------------------------------------------------------KPRHTKESCWKLNGKPPNHEW
                                                                                       KPRHT+E CWKL+GKPP  EW
Subjt:  -------------------------------------------------------------------------------KPRHTKESCWKLNGKPPNHEW

Query:  DNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTIS
         NRGG QK  +   +   KE      SP ++   FN EEI++L   L ++ +PS S  L  S
Subjt:  DNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTIS

TrEMBL top hitse value%identityAlignment
A0A3Q0EZ98 uncharacterized protein LOC106762530 isoform X42.1e-1631.3Show/hide
Query:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------
        ME++ISDTCMFL  A+ I DSI+RTYSKA DVA                              QELD+YRVFEM    DA++LKKFIE DR         
Subjt:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------

Query:  -------------------------------------------------------------------------------KPRHTKESCWKLNGKPPNHEW
                                                                                       KPRHT+E CWKL+GKPP  EW
Subjt:  -------------------------------------------------------------------------------KPRHTKESCWKLNGKPPNHEW

Query:  DNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTIS
         NRGG QK  +   +   KE      SP ++   FN EEI++L   L ++ +PS S  L  S
Subjt:  DNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTIS

A0A438I1U2 Uncharacterized protein3.0e-1551.04Show/hide
Query:  DALILKKFIEPDRKPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTIS
        DA++LK FIE DRKPRHTKE CWKLNGKPP+ EW N GG Q+     +    K+PK ++ S    T  FN+EE+E+L+  L SL+KP+ +  L +S
Subjt:  DALILKKFIEPDRKPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTIS

A0A438I3L4 Retrotrans_gag domain-containing protein1.4e-1236.2Show/hide
Query:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPD----------
        M+ +ISDTCMFL  A+ I DSIH+TYSKARD A                              QELD+Y VFE   + D +ILK FIE D          
Subjt:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPD----------

Query:  -------------------------------RKPRHTKESCWKLNGKP--PNHEWDNRGGSQK
                                       +K RHTK  CWKLNGKP   + EW N+GG QK
Subjt:  -------------------------------RKPRHTKESCWKLNGKP--PNHEWDNRGGSQK

A0A438IHJ0 Uncharacterized protein4.5e-1935.19Show/hide
Query:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------
        M   ISDTCMFL  A+ I D+I +TYSKARD A                              QELD+YRV +     D ++LK FIE DR         
Subjt:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVA------------------------------QELDYYRVFEMNYTADALILKKFIEPDR---------

Query:  ---------------------------------KPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQ
                                         KPRHTKE CWKLNGKPP+HEW+NRG  Q+     +    ++PK ++ S    T+ FN+EE+E+LR  
Subjt:  ---------------------------------KPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSPILETSRFNNEEIERLRIQ

Query:  LNSLNKPSSSSVLTIS
        L SL+K + +  L +S
Subjt:  LNSLNKPSSSSVLTIS

A0A438JH83 Retrovirus-related Pol polyprotein from transposon RE17.4e-1431.43Show/hide
Query:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVAQ--ELDYYRV-FEMNYTADALILKKFIEPDR------------------------------------
        M   IS+TCMFL  A+ I D+I +TYSKARD AQ  E++   +  +     DA ILK FIE DR                                    
Subjt:  MESSISDTCMFLQNAQVILDSIHRTYSKARDVAQ--ELDYYRV-FEMNYTADALILKKFIEPDR------------------------------------

Query:  ---------------------------------------------------------KPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPK
                                                                 KPRHTKE CWKLNGKPP+ EW NRGG Q+     +   +++PK
Subjt:  ---------------------------------------------------------KPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPK

Query:  LEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTISKEPDL
         E+ S    T  FN+EE+E+LR  L SL+KP+ +S L +S  P L
Subjt:  LEQKSPILETSRFNNEEIERLRIQLNSLNKPSSSSVLTISKEPDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCATCCATTAGTGATACATGTATGTTTTTACAAAATGCACAAGTCATATTGGATTCCATTCATCGCACTTACTCCAAAGCTAGAGATGTTGCTCAGGAACTCGA
TTATTATCGCGTATTCGAGATGAATTACACTGCAGATGCCCTAATCCTGAAGAAATTCATTGAACCAGATCGTAAACCACGACACACGAAAGAGAGTTGTTGGAAGTTGA
ATGGAAAGCCTCCCAACCATGAATGGGATAATCGAGGAGGCTCACAAAAGCATGGTTTGGGAAACAAGGAAGACAACACAAAAGAACCCAAATTAGAACAAAAGTCACCA
ATTTTGGAGACTAGTAGATTCAATAACGAAGAGATTGAGAGATTGAGGATACAATTGAACTCTCTCAACAAACCATCAAGTTCCAGTGTCTTGACAATCTCAAAAGAACC
AGATCTTGAGACAGACGATTGGACTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCATCCATTAGTGATACATGTATGTTTTTACAAAATGCACAAGTCATATTGGATTCCATTCATCGCACTTACTCCAAAGCTAGAGATGTTGCTCAGGAACTCGA
TTATTATCGCGTATTCGAGATGAATTACACTGCAGATGCCCTAATCCTGAAGAAATTCATTGAACCAGATCGTAAACCACGACACACGAAAGAGAGTTGTTGGAAGTTGA
ATGGAAAGCCTCCCAACCATGAATGGGATAATCGAGGAGGCTCACAAAAGCATGGTTTGGGAAACAAGGAAGACAACACAAAAGAACCCAAATTAGAACAAAAGTCACCA
ATTTTGGAGACTAGTAGATTCAATAACGAAGAGATTGAGAGATTGAGGATACAATTGAACTCTCTCAACAAACCATCAAGTTCCAGTGTCTTGACAATCTCAAAAGAACC
AGATCTTGAGACAGACGATTGGACTTGCTAA
Protein sequenceShow/hide protein sequence
MESSISDTCMFLQNAQVILDSIHRTYSKARDVAQELDYYRVFEMNYTADALILKKFIEPDRKPRHTKESCWKLNGKPPNHEWDNRGGSQKHGLGNKEDNTKEPKLEQKSP
ILETSRFNNEEIERLRIQLNSLNKPSSSSVLTISKEPDLETDDWTC