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Carg12824 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12824
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAUGMIN subunit 4-like
Genome locationCarg_Chr09:5319480..5323121
RNA-Seq ExpressionCarg12824
SyntenyCarg12824
Gene Ontology termsGO:0051225 - spindle assembly (biological process)
GO:0070652 - HAUS complex (cellular component)
InterPro domainsIPR029327 - HAUS augmin-like complex subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025153.1 AUGMIN subunit 4 [Cucumis melo var. makuwa]1.6e-1048.08Show/hide
Query:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH
        D     MALSREID+RLKTKCDKVADAF+MDDI                                               VLEQILGVLIKLVKDLKLQH
Subjt:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH

Query:  QHKY
        QHKY
Subjt:  QHKY

KAG7024923.1 AUGMIN subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-43100Show/hide
Query:  MQVIDQVERHYCSTPDGSLVSKPAHDLQLCVLLIADEIRISMALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKYYY
        MQVIDQVERHYCSTPDGSLVSKPAHDLQLCVLLIADEIRISMALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKYYY
Subjt:  MQVIDQVERHYCSTPDGSLVSKPAHDLQLCVLLIADEIRISMALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKYYY

XP_022139359.1 AUGMIN subunit 4 [Momordica charantia]1.6e-1049.04Show/hide
Query:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH
        D     MALSREI+ARLKTKCDKVADAFVMDDI                                               VLEQILGVLIKLVKDLKLQH
Subjt:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH

Query:  QHKY
        QHKY
Subjt:  QHKY

XP_022936191.1 AUGMIN subunit 4-like [Cucurbita moschata]1.4e-17100Show/hide
Query:  MALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKY
        MALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKY
Subjt:  MALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKY

XP_031744847.1 AUGMIN subunit 4 [Cucumis sativus]7.3e-1149.04Show/hide
Query:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH
        D     MALSREIDARLKTKCDKVADAF+MDDI                                               VLEQILGVLIKLVKDLKLQH
Subjt:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH

Query:  QHKY
        QHKY
Subjt:  QHKY

TrEMBL top hitse value%identityAlignment
A0A0A0K3S8 Uncharacterized protein3.5e-1149.04Show/hide
Query:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH
        D     MALSREIDARLKTKCDKVADAF+MDDI                                               VLEQILGVLIKLVKDLKLQH
Subjt:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH

Query:  QHKY
        QHKY
Subjt:  QHKY

A0A1S3BHI2 AUGMIN subunit 47.8e-1148.08Show/hide
Query:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH
        D     MALSREID+RLKTKCDKVADAF+MDDI                                               VLEQILGVLIKLVKDLKLQH
Subjt:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH

Query:  QHKY
        QHKY
Subjt:  QHKY

A0A5A7SKF9 AUGMIN subunit 47.8e-1148.08Show/hide
Query:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH
        D     MALSREID+RLKTKCDKVADAF+MDDI                                               VLEQILGVLIKLVKDLKLQH
Subjt:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH

Query:  QHKY
        QHKY
Subjt:  QHKY

A0A6J1CCQ9 AUGMIN subunit 47.8e-1149.04Show/hide
Query:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH
        D     MALSREI+ARLKTKCDKVADAFVMDDI                                               VLEQILGVLIKLVKDLKLQH
Subjt:  DEIRISMALSREIDARLKTKCDKVADAFVMDDI-----------------------------------------------VLEQILGVLIKLVKDLKLQH

Query:  QHKY
        QHKY
Subjt:  QHKY

A0A6J1F6U1 AUGMIN subunit 4-like6.6e-18100Show/hide
Query:  MALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKY
        MALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKY
Subjt:  MALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKY

SwissProt top hitse value%identityAlignment
Q8GYM3 AUGMIN subunit 41.3e-0738.39Show/hide
Query:  LQLCVLLIADEIRISMALSREIDARLKTKCDKVADA-----------------------FVMDDI-----------------------VLEQILGVLIKL
        +QL   +  D     M L+REI+ RLK KCDK+ADA                       F++++I                       VLEQILGVLIKL
Subjt:  LQLCVLLIADEIRISMALSREIDARLKTKCDKVADA-----------------------FVMDDI-----------------------VLEQILGVLIKL

Query:  VKDLKLQHQHKY
        VKDLKL+HQHKY
Subjt:  VKDLKLQHQHKY

Arabidopsis top hitse value%identityAlignment
AT1G50710.1 unknown protein9.5e-0938.39Show/hide
Query:  LQLCVLLIADEIRISMALSREIDARLKTKCDKVADA-----------------------FVMDDI-----------------------VLEQILGVLIKL
        +QL   +  D     M L+REI+ RLK KCDK+ADA                       F++++I                       VLEQILGVLIKL
Subjt:  LQLCVLLIADEIRISMALSREIDARLKTKCDKVADA-----------------------FVMDDI-----------------------VLEQILGVLIKL

Query:  VKDLKLQHQHKY
        VKDLKL+HQHKY
Subjt:  VKDLKLQHQHKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTGATTGATCAGGTGGAGCGCCACTACTGCTCGACTCCCGATGGATCTCTCGTCTCCAAGCCCGCCCACGATCTACAACTGTGTGTTTTATTGATCGCTGATGA
AATCCGAATATCAATGGCCCTTTCCCGTGAGATTGATGCTCGTTTGAAGACGAAATGTGATAAGGTAGCTGATGCTTTTGTGATGGATGATATTGTTCTTGAGCAGATAT
TGGGAGTACTGATTAAGCTTGTCAAAGATTTGAAGCTGCAGCATCAACATAAATATTATTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTGATTGATCAGGTGGAGCGCCACTACTGCTCGACTCCCGATGGATCTCTCGTCTCCAAGCCCGCCCACGATCTACAACTGTGTGTTTTATTGATCGCTGATGA
AATCCGAATATCAATGGCCCTTTCCCGTGAGATTGATGCTCGTTTGAAGACGAAATGTGATAAGGTAGCTGATGCTTTTGTGATGGATGATATTGTTCTTGAGCAGATAT
TGGGAGTACTGATTAAGCTTGTCAAAGATTTGAAGCTGCAGCATCAACATAAATATTATTATTAA
Protein sequenceShow/hide protein sequence
MQVIDQVERHYCSTPDGSLVSKPAHDLQLCVLLIADEIRISMALSREIDARLKTKCDKVADAFVMDDIVLEQILGVLIKLVKDLKLQHQHKYYY