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Carg12873 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12873
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPre-mRNA-splicing factor like
Genome locationCarg_Chr09:5647640..5650260
RNA-Seq ExpressionCarg12873
SyntenyCarg12873
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592094.1 hypothetical protein SDJN03_14440, partial [Cucurbita argyrosperma subsp. sororia]1.9e-7199.28Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPP+EEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
XP_022936022.1 uncharacterized protein LOC111442743 [Cucurbita moschata]1.4e-71100Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
XP_022975858.1 uncharacterized protein LOC111476432 [Cucurbita maxima]1.2e-7098.56Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSP+VEIQ+PPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
XP_023536283.1 uncharacterized protein LOC111797504 [Cucurbita pepo subsp. pepo]4.6e-7097.84Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSP+VEIQ+PPPKVKEEMTIYLGPHGAPPSQSKQDL+PANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
XP_038898121.1 uncharacterized protein LOC120085905 [Benincasa hispida]1.4e-6391.37Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHK PPVEEDEWDTDGFVIPSLGI  EET+QTK  SP+VEIQ+PPPKVKEE TIYLGPHGAPPSQSKQDLNP NRK RLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNM KGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
TrEMBL top hitse value%identityAlignment
A0A0A0K8B7 Uncharacterized protein2.2e-6289.21Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSV KAPP EEDEWDTDGFVIPSLGI  EE DQT+V SP+VEI++PPPKVKEE TIYLGPHGAPPSQSKQDLNP NRK RLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNM KGSSRDWLDPHCHEA+FEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
A0A1S3CJS1 uncharacterized protein LOC1035012432.5e-6188.49Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSV KAPP EEDEWDTDGFVIPSLGI  EETDQT+V SP+VEI++PPPKVKEE TIYLGPHGAPPSQSKQDLNP NRK RLK KLKEADRRTT GRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVG GKSSTNMTKGSSRDWLDPHCHEA+FEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
A0A6J1CE06 uncharacterized protein LOC1110103855.0e-6290.65Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSV K PPVEEDEWDTDGFVIPSLGI  EETDQTKV SPEVEI +PPPK KEE TIYLGPHGAPPSQSKQDLN  NRK RLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNM KGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
A0A6J1F787 uncharacterized protein LOC1114427436.9e-72100Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
A0A6J1IKG2 uncharacterized protein LOC1114764325.8e-7198.56Show/hide
Query:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
        MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSP+VEIQ+PPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE
Subjt:  MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRE

Query:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
        NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
Subjt:  NKLENLRELVGGGKSSTNMTKGSSRDWLDPHCHEAQFEK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G55640.1 unknown protein7.4e-3462.04Show/hide
Query:  PPVEE-DEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDP-PPKVKEEMTIYLGPHGAPPSQSKQ-DLNPANRKHRLKQKLKEADRRTT-TGRENKLEN
        P VE+ DEWDTDGFVIPSL IEE++ +    S  EVE   P  PK K E  IYLGPHGAPPSQ +    N ++RK R KQ LKEAD++ + +GRENK+ N
Subjt:  PPVEE-DEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDP-PPKVKEEMTIYLGPHGAPPSQSKQ-DLNPANRKHRLKQKLKEADRRTT-TGRENKLEN

Query:  LRELVGGG---KSSTNMTKGSSRDWLDPHCHEAQFEK
        LRELVGGG   +  TNM KG SRDWLDPHCHE+QFEK
Subjt:  LRELVGGG---KSSTNMTKGSSRDWLDPHCHEAQFEK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCGTCGTCTGTGCACAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGACACTGATGGGTTCGTGATTCCCAGCTTGGGAATAGAAGAAGAAGAGACAGACCAAAC
TAAAGTTAGCTCTCCAGAAGTAGAGATCCAAGACCCTCCTCCAAAGGTTAAAGAAGAGATGACGATCTATCTTGGCCCACATGGCGCGCCACCATCACAGTCAAAACAAG
ATTTGAACCCCGCCAATCGTAAACATAGGTTAAAGCAAAAATTGAAGGAAGCAGATCGGAGGACCACGACGGGACGGGAGAATAAGTTGGAGAATTTGAGAGAGCTTGTA
GGTGGTGGAAAATCAAGCACCAATATGACAAAAGGTTCTTCAAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTTGAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCGTCGTCTGTGCACAAAGCTCCTCCAGTTGAAGAAGATGAGTGGGACACTGATGGGTTCGTGATTCCCAGCTTGGGAATAGAAGAAGAAGAGACAGACCAAAC
TAAAGTTAGCTCTCCAGAAGTAGAGATCCAAGACCCTCCTCCAAAGGTTAAAGAAGAGATGACGATCTATCTTGGCCCACATGGCGCGCCACCATCACAGTCAAAACAAG
ATTTGAACCCCGCCAATCGTAAACATAGGTTAAAGCAAAAATTGAAGGAAGCAGATCGGAGGACCACGACGGGACGGGAGAATAAGTTGGAGAATTTGAGAGAGCTTGTA
GGTGGTGGAAAATCAAGCACCAATATGACAAAAGGTTCTTCAAGGGACTGGCTTGACCCACATTGCCATGAGGCTCAGTTTGAGAAGTAA
Protein sequenceShow/hide protein sequence
MDPSSVHKAPPVEEDEWDTDGFVIPSLGIEEEETDQTKVSSPEVEIQDPPPKVKEEMTIYLGPHGAPPSQSKQDLNPANRKHRLKQKLKEADRRTTTGRENKLENLRELV
GGGKSSTNMTKGSSRDWLDPHCHEAQFEK