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Carg12880 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12880
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationCarg_Chr05:10498580..10499495
RNA-Seq ExpressionCarg12880
SyntenyCarg12880
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030269.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]4.9e-40100Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNGGYS
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNGGYS
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNGGYS
XP_008463014.1 PREDICTED: RPM1-interacting protein 4-like isoform X1 [Cucumis melo]2.4e-3187.18Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNG
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAKAPPVRYIHN F    L+G
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNG
XP_022936748.1 uncharacterized protein LOC111443250 [Cucurbita moschata]8.7e-2994.03Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYI
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPP +++
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYI
XP_022975420.1 uncharacterized protein LOC111474733 isoform X1 [Cucurbita maxima]1.8e-2984.81Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRY---IHNPFSFVLL
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPP ++   I + F F+ L
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRY---IHNPFSFVLL
XP_023535777.1 uncharacterized protein LOC111797108 isoform X1 [Cucurbita pepo subsp. pepo]1.8e-2984.81Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRY---IHNPFSFVLL
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPP ++   I + F F+ L
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRY---IHNPFSFVLL
TrEMBL top hitse value%identityAlignment
A0A1S3CI83 RPM1-interacting protein 4-like isoform X11.2e-3187.18Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNG
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GR+  DPAKAPPVRYIHN F    L+G
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNG
A0A6J1CEA3 RPM1-interacting protein 41.0e-2789.55Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYI
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GR GADP+KAPP +++
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYI
A0A6J1FE40 uncharacterized protein LOC1114432504.2e-2994.03Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYI
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPP +++
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYI
A0A6J1ID15 uncharacterized protein LOC111474733 isoform X24.2e-2994.03Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYI
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPP +++
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYI
A0A6J1IGN4 uncharacterized protein LOC111474733 isoform X18.5e-3084.81Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRY---IHNPFSFVLL
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPP ++   I + F F+ L
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRY---IHNPFSFVLL
SwissProt top hitse value%identityAlignment
O22633 Protein NOI41.8e-2171.43Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPAKAPPVRYI
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G DP+K  P +++
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPAKAPPVRYI
Q8GYN5 RPM1-interacting protein 46.3e-0654.05Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG
        +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG
Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein1.8e-1989.36Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK
        M DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK
AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein7.6e-2375Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPAKAPPVR
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G DP+K  PV+
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPAKAPPVR
AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein4.9e-2275.76Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPAKAPPVR
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G DP+K  PV+
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPAKAPPVR
AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein8.4e-2272.06Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPAKAPPVRYI
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  ++G     G DP+K  P +++
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGR---SGADPAKAPPVRYI
AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein2.1e-1271.74Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS
        +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGACAAAGGTCGGCCATTACCAAAGTTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAA
AACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTTTTG
TGCTATTGAATGGTGGTTATAGCTAG
mRNA sequenceShow/hide mRNA sequence
AAAGTCGCCTCCCTCTCTCTCTCTCAATCCGTCAGTGTTGTTTTCTCCCTTCGATTGATTTTGAAATTCCATTTTTTTTTTCCTCGGGAGCGTTTCTCTCTCCAGAATTC
ATGACGGACAAAGGTCGGCCATTACCAAAGTTTGGTGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGGTTCACCGTGATTTTTAACAAAGCTAGGGATGAGAAGAA
AACAGGCGGCAAACCTGATTCACCTGGAAAAGTTGATGCACAGGGCAGGTCTGGAGCGGATCCTGCCAAGGCACCGCCTGTGAGATACATTCATAATCCTTTTTCTTTTG
TGCTATTGAATGGTGGTTATAGCTAG
Protein sequenceShow/hide protein sequence
MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAPPVRYIHNPFSFVLLNGGYS