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Carg12948 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12948
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMethylthioribose-1-phosphate isomerase
Genome locationCarg_Chr10:3606553..3608605
RNA-Seq ExpressionCarg12948
SyntenyCarg12948
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023709.1 hypothetical protein SDJN02_14735, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-157100Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQHPRWHLLPPPIDVGPLISPPFGASVLTSMPPGVHPPLRFSLLTETSPGLALIPFCSHWHTAWCPPPSG
        MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQHPRWHLLPPPIDVGPLISPPFGASVLTSMPPGVHPPLRFSLLTETSPGLALIPFCSHWHTAWCPPPSG
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQHPRWHLLPPPIDVGPLISPPFGASVLTSMPPGVHPPLRFSLLTETSPGLALIPFCSHWHTAWCPPPSG

Query:  FSLLTETSPGLALIPFVTAQAHHYQILSFLGSPMRSPQCFKTCYATGTKFTFLIETGSDPHLTYPFLPEKKLLYSRGGLPEQGAAFGIAVWNPAFDVTLV
        FSLLTETSPGLALIPFVTAQAHHYQILSFLGSPMRSPQCFKTCYATGTKFTFLIETGSDPHLTYPFLPEKKLLYSRGGLPEQGAAFGIAVWNPAFDVTLV
Subjt:  FSLLTETSPGLALIPFVTAQAHHYQILSFLGSPMRSPQCFKTCYATGTKFTFLIETGSDPHLTYPFLPEKKLLYSRGGLPEQGAAFGIAVWNPAFDVTLV

Query:  RNQDSPQWESSQRKILILSTYRSLFERQRRRLRREPASLVDDMLFCRIYRYKNVVDHIFGNSWLSF
        RNQDSPQWESSQRKILILSTYRSLFERQRRRLRREPASLVDDMLFCRIYRYKNVVDHIFGNSWLSF
Subjt:  RNQDSPQWESSQRKILILSTYRSLFERQRRRLRREPASLVDDMLFCRIYRYKNVVDHIFGNSWLSF

KAG7024023.1 hypothetical protein SDJN02_15052, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-0540.71Show/hide
Query:  LDQHPRWHLLPPPIDVGPLISPPFGASVLTSMPPGVHPPLRFSLLTET-SPGLALIPFCSHWHTAWCPPPSGFSLLTE-TSPGLALIPFVTAQAHHYQI-
        L++ PRWHL P PIDVG    PP G SVL   PP VH PLR S+ + T +  LALIPF +  ++     P    L+TE  S GL +   V + A   ++ 
Subjt:  LDQHPRWHLLPPPIDVGPLISPPFGASVLTSMPPGVHPPLRFSLLTET-SPGLALIPFCSHWHTAWCPPPSGFSLLTE-TSPGLALIPFVTAQAHHYQI-

Query:  --LSFLGSPMRSP
          L+  G P+  P
Subjt:  --LSFLGSPMRSP

XP_008450940.1 PREDICTED: methylthioribose-1-phosphate isomerase [Cucumis melo]1.3e-0481.25Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ
        M  DS NGGEVG DNSL SICYK+GSLRLLDQ
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ

XP_011660028.1 methylthioribose-1-phosphate isomerase [Cucumis sativus]1.3e-0481.25Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ
        M  DS NGGEVG DNSL SICYK+GSLRLLDQ
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ

XP_038880122.1 methylthioribose-1-phosphate isomerase [Benincasa hispida]1.3e-0481.25Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ
        M  +S NGGEVGADNSL SICYK+GSLRLLDQ
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ

TrEMBL top hitse value%identityAlignment
A0A0A0LZL4 Methylthioribose-1-phosphate isomerase6.3e-0581.25Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ
        M  DS NGGEVG DNSL SICYK+GSLRLLDQ
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ

A0A1S3BPT0 Methylthioribose-1-phosphate isomerase6.3e-0581.25Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ
        M  DS NGGEVG DNSL SICYK+GSLRLLDQ
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ

A0A5D3CHZ0 Methylthioribose-1-phosphate isomerase6.3e-0581.25Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ
        M  DS NGGEVG DNSL SICYK+GSLRLLDQ
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ

A0A6J1F5M2 Methylthioribose-1-phosphate isomerase5.3e-0475Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ
        M  D  NGGE+GA+NSL SICYK+GSLRLLDQ
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ

A0A6J1HVL4 Methylthioribose-1-phosphate isomerase5.3e-0475Show/hide
Query:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ
        M  D  NGGE+GA+NSL SICYK+GSLRLLDQ
Subjt:  MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQ

SwissProt top hitse value%identityAlignment
B9HCR2 Methylthioribose-1-phosphate isomerase3.5e-0539.74Show/hide
Query:  AHHYQILSFLGSPMRSPQCFKTCYATGTKFTFLIETGSDPHLTYPFLPEKKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        A H+ I  ++ +P+ S   F +  ++G +   +IE  S           K++L +RGGL EQ AA GI+VWNPAFDVT
Subjt:  AHHYQILSFLGSPMRSPQCFKTCYATGTKFTFLIETGSDPHLTYPFLPEKKLLYSRGGLPEQGAAFGIAVWNPAFDVT

B9RR88 Methylthioribose-1-phosphate isomerase1.2e-0555.56Show/hide
Query:  IETGSDPHLTYPFLPEKKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        +   S  H+       K+LL SRGGL EQ AA GI+VWNPAFDVT
Subjt:  IETGSDPHLTYPFLPEKKLLYSRGGLPEQGAAFGIAVWNPAFDVT

D7TCD0 Methylthioribose-1-phosphate isomerase7.9e-0579.31Show/hide
Query:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        K+LL SRGGL EQ AA GI VWNPAFDVT
Subjt:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT

Q948X8 Methylthioribose-1-phosphate isomerase4.6e-0575.86Show/hide
Query:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        K+LL++RGGL EQ AA GI+VWNPAFDVT
Subjt:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT

Q9AYT7 Methylthioribose-1-phosphate isomerase6.7e-0472.41Show/hide
Query:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        K+LL S GGL +Q AA GI+VWNPAFDVT
Subjt:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT

Arabidopsis top hitse value%identityAlignment
AT2G05830.1 NagB/RpiA/CoA transferase-like superfamily protein3.1e-0462.07Show/hide
Query:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        K+L+++ GGL E+ AA GI+VWNPAFD+T
Subjt:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT

AT2G05830.2 NagB/RpiA/CoA transferase-like superfamily protein3.1e-0462.07Show/hide
Query:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        K+L+++ GGL E+ AA GI+VWNPAFD+T
Subjt:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT

AT2G05830.3 NagB/RpiA/CoA transferase-like superfamily protein3.1e-0462.07Show/hide
Query:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        K+L+++ GGL E+ AA GI+VWNPAFD+T
Subjt:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT

AT2G05830.4 NagB/RpiA/CoA transferase-like superfamily protein3.1e-0462.07Show/hide
Query:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT
        K+L+++ GGL E+ AA GI+VWNPAFD+T
Subjt:  KKLLYSRGGLPEQGAAFGIAVWNPAFDVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTGATTCGAAAAATGGCGGCGAAGTCGGAGCGGATAACTCTCTTCCGTCCATCTGTTACAAGAAGGGCTCCTTGCGGCTGCTCGATCAGCATCCTCGCTGGCA
CTTGCTCCCTCCTCCAATCGATGTAGGACCCTTAATTTCACCTCCCTTTGGGGCCAGCGTTCTCACTAGCATGCCGCCTGGTGTCCATCCCCCTTTGAGGTTTAGCCTCC
TCACTGAAACATCGCCCGGTTTGGCTCTGATACCATTTTGTTCTCACTGGCACACCGCCTGGTGTCCACCCCCTTCGGGGTTCAGCCTCCTCACTGAAACATCGCCCGGT
CTGGCTCTAATACCATTTGTGACAGCCCAAGCTCACCACTACCAGATATTGTCTTTTTTGGGTTCCCCCATGAGGTCCCCTCAATGTTTTAAAACGTGCTATGCTACTGG
CACAAAGTTCACCTTCCTCATTGAAACAGGCTCTGATCCACACCTTACTTATCCCTTTCTTCCGGAGAAGAAGTTGTTGTACTCTCGTGGAGGTCTCCCCGAGCAAGGCG
CTGCGTTTGGCATCGCTGTCTGGAACCCCGCTTTTGACGTTACTCTTGTTAGAAATCAGGACTCTCCACAATGGGAGTCATCACAAAGGAAGATTCTGATTCTTTCAACG
TATAGGAGTTTGTTCGAAAGACAGCGGAGACGTCTACGTAGAGAACCGGCCTCCCTTGTGGACGACATGCTATTCTGCAGAATTTATAGATACAAGAATGTAGTTGATCA
TATCTTTGGCAATTCATGGCTCTCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTTGATTCGAAAAATGGCGGCGAAGTCGGAGCGGATAACTCTCTTCCGTCCATCTGTTACAAGAAGGGCTCCTTGCGGCTGCTCGATCAGCATCCTCGCTGGCA
CTTGCTCCCTCCTCCAATCGATGTAGGACCCTTAATTTCACCTCCCTTTGGGGCCAGCGTTCTCACTAGCATGCCGCCTGGTGTCCATCCCCCTTTGAGGTTTAGCCTCC
TCACTGAAACATCGCCCGGTTTGGCTCTGATACCATTTTGTTCTCACTGGCACACCGCCTGGTGTCCACCCCCTTCGGGGTTCAGCCTCCTCACTGAAACATCGCCCGGT
CTGGCTCTAATACCATTTGTGACAGCCCAAGCTCACCACTACCAGATATTGTCTTTTTTGGGTTCCCCCATGAGGTCCCCTCAATGTTTTAAAACGTGCTATGCTACTGG
CACAAAGTTCACCTTCCTCATTGAAACAGGCTCTGATCCACACCTTACTTATCCCTTTCTTCCGGAGAAGAAGTTGTTGTACTCTCGTGGAGGTCTCCCCGAGCAAGGCG
CTGCGTTTGGCATCGCTGTCTGGAACCCCGCTTTTGACGTTACTCTTGTTAGAAATCAGGACTCTCCACAATGGGAGTCATCACAAAGGAAGATTCTGATTCTTTCAACG
TATAGGAGTTTGTTCGAAAGACAGCGGAGACGTCTACGTAGAGAACCGGCCTCCCTTGTGGACGACATGCTATTCTGCAGAATTTATAGATACAAGAATGTAGTTGATCA
TATCTTTGGCAATTCATGGCTCTCTTTCTGA
Protein sequenceShow/hide protein sequence
MGFDSKNGGEVGADNSLPSICYKKGSLRLLDQHPRWHLLPPPIDVGPLISPPFGASVLTSMPPGVHPPLRFSLLTETSPGLALIPFCSHWHTAWCPPPSGFSLLTETSPG
LALIPFVTAQAHHYQILSFLGSPMRSPQCFKTCYATGTKFTFLIETGSDPHLTYPFLPEKKLLYSRGGLPEQGAAFGIAVWNPAFDVTLVRNQDSPQWESSQRKILILST
YRSLFERQRRRLRREPASLVDDMLFCRIYRYKNVVDHIFGNSWLSF